HL_7TOP_029
3D structure
- PDB id
- 7TOP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- UUGAUAUGAUG
- Length
- 11 nucleotides
- Bulged bases
- 7TOP|1|A25S|G|1354, 7TOP|1|A25S|U|1356
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7TOP_029 not in the Motif Atlas
- Geometric match to HL_5TBW_029
- Geometric discrepancy: 0.2328
- The information below is about HL_5TBW_029
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_01763.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
7TOP|1|A25S|U|1347
7TOP|1|A25S|U|1348
7TOP|1|A25S|G|1349
7TOP|1|A25S|A|1350
7TOP|1|A25S|U|1351
7TOP|1|A25S|A|1352
7TOP|1|A25S|U|1353
7TOP|1|A25S|G|1354
7TOP|1|A25S|A|1355
7TOP|1|A25S|U|1356
7TOP|1|A25S|G|1357
Current chains
- Chain A25S
- 25S rRNA
Nearby chains
- Chain AL04
- RPL4A isoform 1
- Chain AL06
- 60S ribosomal protein L6-A
- Chain AL18
- 60S ribosomal protein L18-A
- Chain AL32
- RPL32 isoform 1
Coloring options: