HL_7TOP_029

3D structure

PDB id

7TOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UUGAUAUGAUG

Length

11 nucleotides

Bulged bases

7TOP|1|A25S|G|1354, 7TOP|1|A25S|U|1356

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOP_029 not in the Motif Atlas

Geometric match to HL_5TBW_029

Geometric discrepancy: 0.2328

The information below is about HL_5TBW_029

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01763.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

7TOP|1|A25S|U|1347
7TOP|1|A25S|U|1348
7TOP|1|A25S|G|1349
7TOP|1|A25S|A|1350
7TOP|1|A25S|U|1351
7TOP|1|A25S|A|1352
7TOP|1|A25S|U|1353
7TOP|1|A25S|G|1354
7TOP|1|A25S|A|1355
7TOP|1|A25S|U|1356
7TOP|1|A25S|G|1357

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL04

RPL4A isoform 1

Chain AL06

60S ribosomal protein L6-A

Chain AL18

60S ribosomal protein L18-A

Chain AL32

RPL32 isoform 1