HL_7TOP_032

3D structure

PDB id

7TOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

7TOP|1|A25S|G|1507, 7TOP|1|A25S|U|1511

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOP_032 not in the Motif Atlas

Homologous match to HL_8C3A_032

Geometric discrepancy: 0.114

The information below is about HL_8C3A_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

7TOP|1|A25S|A|1506
7TOP|1|A25S|G|1507
7TOP|1|A25S|C|1508
7TOP|1|A25S|A|1509
7TOP|1|A25S|G|1510
7TOP|1|A25S|U|1511
7TOP|1|A25S|U|1512

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL17

60S ribosomal protein L17-A

Chain AL19

60S ribosomal protein L19-A

Chain AL39

60S ribosomal protein L39