HL_7TOP_043

3D structure

PDB id

7TOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

7TOP|1|A25S|U|1925

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOP_043 not in the Motif Atlas

Geometric match to HL_7RQB_042

Geometric discrepancy: 0.0957

The information below is about HL_7RQB_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_03562.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

56

Unit IDs

7TOP|1|A25S|C|1923
7TOP|1|A25S|U|1924
7TOP|1|A25S|U|1925
7TOP|1|A25S|C|1926
7TOP|1|A25S|G|1927
7TOP|1|A25S|G|1928

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL41

60S ribosomal protein L41-A

Chain AL43

60S ribosomal protein L43-A