HL_7TOP_067

3D structure

PDB id

7TOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UGAUCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOP_067 not in the Motif Atlas

Homologous match to HL_8C3A_067

Geometric discrepancy: 0.1316

The information below is about HL_8C3A_067

Detailed Annotation

Ribsomal LSU H95

Broad Annotation

Ribsomal LSU H95

Motif group

HL_65794.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

11

Unit IDs

7TOP|1|A25S|U|3068
7TOP|1|A25S|G|3069
7TOP|1|A25S|A|3070
7TOP|1|A25S|U|3071
7TOP|1|A25S|C|3072
7TOP|1|A25S|A|3073

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL19

60S ribosomal protein L19-A

Chain AL22

60S ribosomal protein L22-A

Chain AL31

60S ribosomal protein L31-A