HL_7TOP_070

3D structure

PDB id

7TOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CGGAAAGG

Length

8 nucleotides

Bulged bases

7TOP|1|A25S|A|3243, 7TOP|1|A25S|A|3244

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOP_070 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.1154

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

7TOP|1|A25S|C|3240
7TOP|1|A25S|G|3241
7TOP|1|A25S|G|3242
7TOP|1|A25S|A|3243
7TOP|1|A25S|A|3244
7TOP|1|A25S|A|3245
7TOP|1|A25S|G|3246
7TOP|1|A25S|G|3247

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL03

RPL3 isoform 1

Chain AL16

60S ribosomal protein L16-A