HL_7TOP_077
3D structure
- PDB id
- 7TOP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- GGUGAC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7TOP_077 not in the Motif Atlas
- Homologous match to HL_5TBW_186
- Geometric discrepancy: 0.1051
- The information below is about HL_5TBW_186
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 360
Unit IDs
7TOP|1|A5S|G|88
7TOP|1|A5S|G|89
7TOP|1|A5S|U|90
7TOP|1|A5S|G|91
7TOP|1|A5S|A|92
7TOP|1|A5S|C|93
Current chains
- Chain A5S
- 5S rRNA
Nearby chains
- Chain A25S
- Large subunit ribosomal RNA; LSU rRNA
- Chain AL07
- 60S ribosomal protein L7-A
- Chain AL10
- RPL10 isoform 1
- Chain AL20
- 60S ribosomal protein L20-A
Coloring options: