HL_7TOP_079

3D structure

PDB id

7TOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GCUCAUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOP_079 not in the Motif Atlas

Geometric match to HL_4V9Q_214

Geometric discrepancy: 0.2278

The information below is about HL_4V9Q_214

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_06059.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

51

Unit IDs

7TOP|1|APTN|G|31
7TOP|1|APTN|C|32
7TOP|1|APTN|U|33
7TOP|1|APTN|C|34
7TOP|1|APTN|A|35
7TOP|1|APTN|U|36
7TOP|1|APTN|A|37
7TOP|1|APTN|A|38
7TOP|1|APTN|C|39

Current chains

Chain APTN

tRNAfMet

Nearby chains