HL_7TOP_081

3D structure

PDB id

7TOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GAGUGUGUAACAACUC

Length

16 nucleotides

Bulged bases

7TOP|1|A25S|A|1263

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOP_081 not in the Motif Atlas

Geometric match to HL_5TBW_227

Geometric discrepancy: 0.311

The information below is about HL_5TBW_227

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02373.2

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

7TOP|1|A25S|G|1262
7TOP|1|A25S|A|1263
7TOP|1|A25S|G|1264
7TOP|1|A25S|U|1265
7TOP|1|A25S|G|1266
7TOP|1|A25S|U|1267
7TOP|1|A25S|G|1268
7TOP|1|A25S|U|1269
7TOP|1|A25S|A|1270
7TOP|1|A25S|A|1271
7TOP|1|A25S|C|1272
7TOP|1|A25S|A|1273
7TOP|1|A25S|A|1274
7TOP|1|A25S|C|1275
7TOP|1|A25S|U|1276
7TOP|1|A25S|C|1277

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL12

Ribosomal protein L12

Chain AL40

Ubiquitin-60S ribosomal protein L40