HL_7TOP_085
3D structure
- PDB id
- 7TOP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- UUCCCGUCCGAUCA
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7TOP_085 not in the Motif Atlas
- Homologous match to HL_8C3A_228
- Geometric discrepancy: 0.1079
- The information below is about HL_8C3A_228
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50688.1
- Basepair signature
- cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
7TOP|1|A5S|U|32
7TOP|1|A5S|U|33
7TOP|1|A5S|C|34
7TOP|1|A5S|C|35
7TOP|1|A5S|C|36
7TOP|1|A5S|G|37
7TOP|1|A5S|U|38
7TOP|1|A5S|C|39
7TOP|1|A5S|C|40
7TOP|1|A5S|G|41
7TOP|1|A5S|A|42
7TOP|1|A5S|U|43
7TOP|1|A5S|C|44
7TOP|1|A5S|A|45
Current chains
- Chain A5S
- 5S rRNA
Nearby chains
- Chain A25S
- Large subunit ribosomal RNA; LSU rRNA
- Chain AL05
- RPL5 isoform 1
- Chain AL11
- RPL11A isoform 1
Coloring options: