HL_7TOQ_005

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGUGACUC

Length

8 nucleotides

Bulged bases

7TOQ|1|A18S|C|293, 7TOQ|1|A18S|U|294

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOQ_005 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.2542

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

7TOQ|1|A18S|G|288
7TOQ|1|A18S|G|289
7TOQ|1|A18S|U|290
7TOQ|1|A18S|G|291
7TOQ|1|A18S|A|292
7TOQ|1|A18S|C|293
7TOQ|1|A18S|U|294
7TOQ|1|A18S|C|295

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS04

40S ribosomal protein S4

Chain AS06

40S ribosomal protein S6

Chain AS11

40S ribosomal protein S11