7TOQ Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7TOQ_008 | 1/A18S/416:421 | No text annotation | geometric HL_4V88_194 NA | |
| HL_7TOQ_009 | 1/A18S/441:452 | No text annotation | geometric HL_4V88_195 NA | |
| HL_7TOQ_021 | 1/A18S/1054:1064 | No text annotation | geometric HL_5J7L_017 NA | |
| HL_7TOQ_023 | 1/A18S/1141:1146 | GNRA | geometric HL_4V88_210 NA | |
| HL_7TOQ_024 | 1/A18S/1178:1183 | GNRA | geometric HL_1Q96_001 HL_34789.1 | |
| HL_7TOQ_025 | 1/A18S/1245:1254 | No text annotation | geometric HL_4WF9_003 HL_75660.6 | |
| HL_7TOQ_027 | 1/A18S/1353:1358 | GNRA | geometric HL_4V9F_015 HL_34789.1 | |
| HL_7TOQ_032 | 1/A18S/1614:1625 | No text annotation | geometric HL_4V88_219 NA | |
| HL_7TOQ_036 | 1/A25S/37:44 | No text annotation | geometric HL_4V9F_006 HL_48677.1 | |
| HL_7TOQ_037 | 1/A25S/68:73 | No text annotation | homologous HL_8C3A_002 NA | |
| HL_7TOQ_038 | 1/A25S/89:95 | No text annotation | homologous HL_8C3A_003 NA | |
| HL_7TOQ_039 | 1/A25S/131:137 | No text annotation | geometric HL_7RQB_011 NA | |
| HL_7TOQ_040 | 1/A25S/204:211 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_005 NA | |
| HL_7TOQ_041 | 1/A25S/222:226 | No text annotation | homologous HL_8C3A_006 NA | |
| HL_7TOQ_042 | 1/A25S/230:238 | T-loop with unstacked turn | homologous HL_8C3A_007 NA | |
| HL_7TOQ_043 | 1/A25S/289:298 | No text annotation | homologous HL_8C3A_008 NA | |
| HL_7TOQ_044 | 1/A25S/314:323 | Pseudoknot geometry | homologous HL_8C3A_009 NA | |
| HL_7TOQ_045 | 1/A25S/368:373 | GNRA | homologous HL_8C3A_010 NA | |
| HL_7TOQ_046 | 1/A25S/393:398 | GNRA | homologous HL_8C3A_011 NA | |
| HL_7TOQ_048 | 1/A25S/962:970 | No text annotation | geometric HL_2Y9H_003 HL_75660.6 | |
| HL_7TOQ_049 | 1/A25S/1178:1183 | No text annotation | geometric HL_8CRE_021 NA | |
| HL_7TOQ_050 | 1/A25S/1317:1326 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_014 NA | |
| HL_7TOQ_051 | 1/A25S/1364:1373 | No text annotation | ||
| HL_7TOQ_052 | 1/A25S/1389:1394 | GNRA | homologous HL_8C3A_016 NA | |
| HL_7TOQ_054 | 1/A25S/1434:1450 | No text annotation | geometric HL_8KAH_003 NA | |
| HL_7TOQ_055 | 1/A25S/1479:1486 | UNCG variation | geometric HL_6VMY_004 NA | |
| HL_7TOQ_056 | 1/A25S/1561:1566 | GNRA | homologous HL_8C3A_019 NA | |
| HL_7TOQ_057 | 1/A25S/1593:1602 | No text annotation | homologous HL_8C3A_020 NA | |
| HL_7TOQ_058 | 1/A25S/1627:1635 | No text annotation | homologous HL_8C3A_021 NA | |
| HL_7TOQ_059 | 1/A25S/1675:1680 | Externally structured | homologous HL_8C3A_022 NA | |
| HL_7TOQ_118 | 1/A25S/1814:1824 | No text annotation | ||
| HL_7TOQ_061 | 1/A25S/1816:1823 | No text annotation | geometric HL_2ZZM_002 NA | |
| HL_7TOQ_062 | 1/A25S/1864:1870 | GNRA | homologous HL_8C3A_025 NA | |
| HL_7TOQ_063 | 1/A25S/1886:1893 | No text annotation | homologous HL_8C3A_026 NA | |
| HL_7TOQ_066 | 1/A25S/2087:2270 | No text annotation | ||
| HL_7TOQ_067 | 1/A25S/2317:2322 | GNRA | homologous HL_8C3A_030 NA | |
| HL_7TOQ_068 | 1/A25S/2376:2384 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_031 NA | |
| HL_7TOQ_069 | 1/A25S/2420:2426 | Pseudoknot geometry with 3' bulge | homologous HL_8C3A_032 NA | |
| HL_7TOQ_070 | 1/A25S/2458:2463 | GNRA variation | homologous HL_8C3A_033 NA | |
| HL_7TOQ_072 | 1/A25S/2523:2532 | No text annotation | homologous HL_8C3A_035 NA | |
| HL_7TOQ_074 | 1/A25S/2578:2583 | GNRA | homologous HL_8C3A_036 NA | |
| HL_7TOQ_075 | 1/A25S/2624:2632 | No text annotation | homologous HL_8C3A_037 NA | |
| HL_7TOQ_076 | 1/A25S/2664:2670 | No text annotation | homologous HL_8C3A_038 NA | |
| HL_7TOQ_078 | 1/A25S/2738:2742 | No text annotation | homologous HL_8C3A_040 NA | |
| HL_7TOQ_079 | 1/A25S/2792:2799 | No text annotation | homologous HL_8C3A_041 NA | |
| HL_7TOQ_080 | 1/A25S/2810:2816 | GNRA | homologous HL_8C3A_042 NA | |
| HL_7TOQ_081 | 1/A25S/2872:2877 | UNCG | homologous HL_8C3A_043 NA | |
| HL_7TOQ_082 | 1/A25S/3614:3618 | No text annotation | homologous HL_8C3A_045 NA | |
| HL_7TOQ_083 | 1/A25S/3639:3649 | No text annotation | homologous HL_8C3A_046 NA | |
| HL_7TOQ_084 | 1/A25S/3668:3674 | GNRA | homologous HL_8C3A_047 NA | |
| HL_7TOQ_085 | 1/A25S/3724:3729 | GNRA | homologous HL_8C3A_048 NA | |
| HL_7TOQ_086 | 1/A25S/3757:3767 | No text annotation | homologous HL_8C3A_049 NA | |
| HL_7TOQ_087 | 1/A25S/3796:3804 | No text annotation | homologous HL_8C3A_050 NA | |
| HL_7TOQ_088 | 1/A25S/3873:3882 | No text annotation | homologous HL_8C3A_051 NA | |
| HL_7TOQ_092 | 1/A25S/4193:4201 | No text annotation | homologous HL_8C3A_055 NA | |
| HL_7TOQ_093 | 1/A25S/4210:4222 | No text annotation | homologous HL_8C3A_056 NA | |
| HL_7TOQ_094 | 1/A25S/4250:4258 | No text annotation | homologous HL_8C3A_057 NA | |
| HL_7TOQ_095 | 1/A25S/4270:4277 | Pseudoknot geometry | homologous HL_8C3A_058 NA | |
| HL_7TOQ_096 | 1/A25S/4301:4309 | No text annotation | homologous HL_8C3A_059 NA | |
| HL_7TOQ_097 | 1/A25S/4321:4326 | GNRA | homologous HL_8C3A_060 NA | |
| HL_7TOQ_098 | 1/A25S/4352:4362 | No text annotation | geometric HL_2ZZM_002 NA | |
| HL_7TOQ_099 | 1/A25S/4417:4425 | No text annotation | homologous HL_8C3A_062 NA | |
| HL_7TOQ_100 | 1/A25S/4474:4481 | No text annotation | homologous HL_8C3A_063 NA | |
| HL_7TOQ_101 | 1/A25S/4497:4503 | No text annotation | geometric HL_5TBW_063 NA | |
| HL_7TOQ_102 | 1/A25S/4540:4545 | GNRA | homologous HL_8C3A_065 NA | |
| HL_7TOQ_103 | 1/A25S/4603:4608 | GNRA | geometric HL_5TBW_065 NA | |
| HL_7TOQ_104 | 1/A25S/4646:4651 | Ribsomal LSU H95 | homologous HL_8C3A_067 NA | |
| HL_7TOQ_105 | 1/A25S/4688:4702 | No text annotation | homologous HL_8C3A_068 NA | |
| HL_7TOQ_106 | 1/A25S/4906:4915 | No text annotation | geometric HL_5NFV_001 HL_69752.3 | |
| HL_7TOQ_107 | 1/A25S/4975:4983 | No text annotation | geometric HL_5J7L_201 NA | |
| HL_7TOQ_109 | 1/A58S/55:62 | No text annotation | geometric HL_4P5J_004 NA | |
| HL_7TOQ_110 | 1/A58S/68:90 | No text annotation | homologous HL_8C3A_075 NA | |
| HL_7TOQ_111 | 1/A58S/107:112 | UNCG | geometric HL_6CK5_001 HL_61337.1 | |
| HL_7TOQ_112 | 1/A58S/121:129 | No text annotation | ||
| HL_7TOQ_119 | 1/A5S/32:45 | No text annotation | homologous HL_8C3A_228 NA | |
| HL_7TOQ_113 | 1/A5S/36:41 | No text annotation | homologous HL_5TBW_185 NA | |
| HL_7TOQ_114 | 1/A5S/86:91 | GNRA | homologous HL_5TBW_186 NA | |
| HL_7TOQ_116 | 1/PTRN/31:39 | tRNA anticodon loop | geometric HL_4TUE_034 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7TOQ_001 | No text annotation | ||
| HL_7TOQ_002 | No text annotation | ||
| HL_7TOQ_003 | No text annotation | ||
| HL_7TOQ_004 | GNRA | ||
| HL_7TOQ_005 | No text annotation | ||
| HL_7TOQ_006 | No text annotation | ||
| HL_7TOQ_007 | No text annotation | ||
| HL_7TOQ_010 | UNCG | ||
| HL_7TOQ_011 | No text annotation | ||
| HL_7TOQ_012 | No text annotation | ||
| HL_7TOQ_013 | No text annotation | ||
| HL_7TOQ_014 | GNRA variation | ||
| HL_7TOQ_015 | Pseudoknot geometry | ||
| HL_7TOQ_016 | No text annotation | ||
| HL_7TOQ_017 | No text annotation | ||
| HL_7TOQ_018 | No text annotation | ||
| HL_7TOQ_019 | No text annotation | ||
| HL_7TOQ_020 | No text annotation | ||
| HL_7TOQ_022 | Externally structured | ||
| HL_7TOQ_026 | Anticodon loop related | ||
| HL_7TOQ_028 | T-loop related | ||
| HL_7TOQ_029 | No text annotation | ||
| HL_7TOQ_030 | No text annotation | ||
| HL_7TOQ_031 | GNRA | ||
| HL_7TOQ_033 | No text annotation | ||
| HL_7TOQ_034 | No text annotation | ||
| HL_7TOQ_035 | No text annotation | ||
| HL_7TOQ_047 | No text annotation | ||
| HL_7TOQ_053 | Mini UNCG | ||
| HL_7TOQ_060 | GNRA | ||
| HL_7TOQ_064 | No text annotation | ||
| HL_7TOQ_065 | GNRA wlth tandem sheared | ||
| HL_7TOQ_071 | Externally structured | ||
| HL_7TOQ_073 | GNRA | ||
| HL_7TOQ_077 | No text annotation | ||
| HL_7TOQ_089 | No text annotation | ||
| HL_7TOQ_090 | UNCG | ||
| HL_7TOQ_091 | No text annotation | ||
| HL_7TOQ_108 | UNCG variation | ||
| HL_7TOQ_115 | tRNA D-loop | ||
| HL_7TOQ_117 | T-loop with 2 stacked bulged bases |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7TOQ_005 | 1/A18S/49:51, 1/A18S/476:477 | Minor groove platform | geometric IL_4V88_388 NA | |
| IL_7TOQ_019 | 1/A18S/359:364, 1/A18S/396:403 | Kink-turn with non-sequential stacking | geometric IL_5J7L_014 NA | |
| IL_7TOQ_032 | 1/A18S/663:665, 1/A18S/1162:1164 | Isolated non-canonical cWW pair | geometric IL_1Y27_001 NA | |
| IL_7TOQ_033 | 1/A18S/665:671, 1/A18S/1161:1162 | Multiple bulged bases | geometric IL_1R3E_001 IL_44609.1 | |
| IL_7TOQ_034 | 1/A18S/673:675, 1/A18S/1030:1032 | Isolated non-canonical cWW pair | geometric IL_4LFB_061 NA | |
| IL_7TOQ_035 | 1/A18S/676:680, 1/A18S/1025:1029 | tSH-tHW-tHS | geometric IL_5J7L_037 NA | |
| IL_7TOQ_297 | 1/A18S/928:931, 1/A18S/1010:1013 | Tandem non-canonical cWW pairs | homologous IL_8P9A_419 IL_15225.1 | |
| IL_7TOQ_045 | 1/A18S/931:935, 1/A18S/1007:1010 | Tandem non-canonical cWW pairs | geometric IL_4V88_431 NA | |
| IL_7TOQ_046 | 1/A18S/942:945, 1/A18S/981:984 | Tandem non-canonical cWW pairs | geometric IL_4V88_432 NA | |
| IL_7TOQ_047 | 1/A18S/952:956, 1/A18S/967:974 | Kink-turn | geometric IL_7A0S_004 IL_94910.1 | |
| IL_7TOQ_048 | 1/A18S/1042:1047, 1/A18S/1071:1073 | Other IL | geometric IL_4V88_435 NA | |
| IL_7TOQ_049 | 1/A18S/1047:1051, 1/A18S/1067:1071 | tSH-tHW-tHS | geometric IL_4V88_436 NA | |
| IL_7TOQ_050 | 1/A18S/1091:1093, 1/A18S/1152:1158 | No text annotation | geometric IL_4V88_437 NA | |
| IL_7TOQ_054 | 1/A18S/1168:1175, 1/A18S/1186:1191 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | geometric IL_4LFB_034 IL_84044.1 | |
| IL_7TOQ_059 | 1/A18S/1235:1236, 1/A18S/1521:1523 | Minor groove platform | geometric IL_4V88_445 NA | |
| IL_7TOQ_077 | 1/A18S/1700:1702, 1/A18S/1833:1836 | No text annotation | homologous IL_8C3A_470 NA | |
| IL_7TOQ_078 | 1/A18S/1702:1705, 1/A18S/1829:1833 | No text annotation | geometric IL_4V88_464 NA | |
| IL_7TOQ_079 | 1/A18S/1706:1708, 1/A18S/1826:1828 | Isolated non-canonical cWW pair | geometric IL_4V88_465 NA | |
| IL_7TOQ_080 | 1/A18S/1708:1711, 1/A18S/1822:1826 | No text annotation | homologous IL_8CRE_469 IL_28833.1 | |
| IL_7TOQ_081 | 1/A18S/1714:1716, 1/A18S/1817:1819 | Isolated non-canonical cWW contact | geometric IL_5UNE_001 NA | |
| IL_7TOQ_082 | 1/A18S/1717:1722, 1/A18S/1812:1816 | No text annotation | ||
| IL_7TOQ_085 | 1/A18S/1739:1741, 1/A18S/1793:1795 | Isolated non-canonical cWW pair | geometric IL_1YZ9_001 NA | |
| IL_7TOQ_089 | 1/A25S/6:7, 1/A58S/149:151 | Single bulged C | homologous IL_8C3A_002 NA | |
| IL_7TOQ_275 | 1/A25S/12:14, 1/A58S/143:144 | Single bulged U | homologous IL_8C3A_003 NA | |
| IL_7TOQ_091 | 1/A25S/16:18, 1/A58S/139:141 | No text annotation | geometric IL_3ICQ_003 NA | |
| IL_7TOQ_092 | 1/A25S/26:27, 1/A25S/55:57 | No text annotation | homologous IL_8C3A_004 NA | |
| IL_7TOQ_093 | 1/A25S/30:37, 1/A25S/44:52 | 9x8 Sarcin-Ricin; G-bulge | geometric IL_4WF9_008 IL_93502.1 | |
| IL_7TOQ_094 | 1/A25S/81:88, 1/A25S/96:102 | No text annotation | homologous IL_8C3A_006 NA | |
| IL_7TOQ_095 | 1/A25S/118:121, 1/A25S/152:153 | Major groove intercalation | geometric IL_1U9S_003 NA | |
| IL_7TOQ_276 | 1/A25S/118:122, 1/A25S/147:153 | No text annotation | ||
| IL_7TOQ_096 | 1/A25S/121:122, 1/A25S/147:152 | No text annotation | geometric IL_5TBW_007 NA | |
| IL_7TOQ_097 | 1/A25S/125:126, 1/A25S/142:144 | Single bulged C | geometric IL_3D0U_001 IL_05642.1 | |
| IL_7TOQ_098 | 1/A25S/168:173, 1/A25S/263:267 | No text annotation | ||
| IL_7TOQ_277 | 1/A25S/182:189, 1/A25S/252:255 | No text annotation | ||
| IL_7TOQ_100 | 1/A25S/184:189, 1/A25S/252:253 | Multiple bulged bases | geometric IL_1R3E_001 IL_44609.1 | |
| IL_7TOQ_101 | 1/A25S/195:196, 1/A25S/244:246 | Single bulged C | geometric IL_4WF9_035 IL_05642.1 | |
| IL_7TOQ_102 | 1/A25S/199:201, 1/A25S/214:215 | Single bulged U | homologous IL_8C3A_013 NA | |
| IL_7TOQ_103 | 1/A25S/339:342, 1/A58S/32:33 | Minor groove platform | geometric IL_7RQB_073 NA | |
| IL_7TOQ_104 | 1/A25S/348:350, 1/A58S/25:26 | Single bulged A | homologous IL_8C3A_014 NA | |
| IL_7TOQ_105 | 1/A25S/387:390, 1/A25S/401:414 | No text annotation | geometric IL_5TBW_014 NA | |
| IL_7TOQ_106 | 1/A25S/415:421, 1/A58S/13:19 | Triple sheared with non-canonical cWW | geometric IL_5TBW_015 NA | |
| IL_7TOQ_107 | 1/A25S/443:446, 1/A25S/1300:1304 | No text annotation | geometric IL_4PHY_003 NA | |
| IL_7TOQ_108 | 1/A25S/448:450, 1/A25S/1297:1298 | No text annotation | ||
| IL_7TOQ_109 | 1/A25S/459:460, 1/A25S/695:697 | Single bulged C | geometric IL_1S03_002 IL_05642.1 | |
| IL_7TOQ_112 | 1/A25S/481:482, 1/A25S/672:673 | Single bulged C | geometric IL_7KGA_004 NA | |
| IL_7TOQ_279 | 1/A25S/481:485, 1/A25S/671:673 | No text annotation | ||
| IL_7TOQ_113 | 1/A25S/482:485, 1/A25S/671:672 | Multiple bulged bases | geometric IL_7V9E_001 NA | |
| IL_7TOQ_114 | 1/A25S/487:488, 1/A25S/665:669 | Multiple bulged bases | geometric IL_1R3E_001 IL_44609.1 | |
| IL_7TOQ_119 | 1/A25S/508:510, 1/A25S/649:650 | Single bulged A | geometric IL_6WPI_001 IL_14190.1 | |
| IL_7TOQ_122 | 1/A25S/709:710, 1/A25S/1286:1288 | Single bulged G | geometric IL_4LFB_036 IL_28408.1 | |
| IL_7TOQ_123 | 1/A25S/723:724, 1/A25S/942:945 | Multiple bulged bases | geometric IL_7V9E_001 NA | |
| IL_7TOQ_124 | 1/A25S/727:731, 1/A25S/938:939 | No text annotation | ||
| IL_7TOQ_125 | 1/A25S/732:735, 1/A25S/928:937 | No text annotation | ||
| IL_7TOQ_126 | 1/A25S/737:739, 1/A25S/923:926 | No text annotation | geometric IL_5J7L_341 NA | |
| IL_7TOQ_281 | 1/A25S/745:752, 1/A25S/911:919 | No text annotation | geometric IL_8C3A_022 NA | |
| IL_7TOQ_282 | 1/A25S/1077:1082, 1/A25S/1217:1233 | No text annotation | ||
| IL_7TOQ_130 | 1/A25S/1082:1084, 1/A25S/1213:1217 | Isolated near basepair | geometric IL_7A0S_030 IL_42997.4 | |
| IL_7TOQ_131 | 1/A25S/1086:1087, 1/A25S/1209:1211 | Single bulged C | geometric IL_3W3S_001 NA | |
| IL_7TOQ_298 | 1/A25S/1100:1168, 1/A25S/1193:1195 | No text annotation | ||
| IL_7TOQ_134 | 1/A25S/1173:1175, 1/A25S/1186:1188 | Isolated cWH basepair | geometric IL_3W3S_003 NA | |
| IL_7TOQ_135 | 1/A25S/1357:1360, 1/A25S/1378:1382 | No text annotation | ||
| IL_7TOQ_136 | 1/A25S/1360:1361, 1/A25S/1376:1378 | Single bulged G | geometric IL_8VFS_001 NA | |
| IL_7TOQ_137 | 1/A25S/1425:1429, 1/A25S/1455:1460 | Triple sheared related | geometric IL_4V9F_018 IL_67427.1 | |
| IL_7TOQ_138 | 1/A25S/1431:1434, 1/A25S/1450:1453 | Double sheared | geometric IL_4KZD_002 IL_58355.1 | |
| IL_7TOQ_139 | 1/A25S/1467:1468, 1/A25S/1496:1498 | Single bulged A | homologous IL_8C3A_026 NA | |
| IL_7TOQ_140 | 1/A25S/1474:1476, 1/A25S/1489:1490 | Single stack bend | geometric IL_7A0S_005 IL_15011.1 | |
| IL_7TOQ_141 | 1/A25S/1520:1522, 1/A25S/1655:1657 | Isolated non-canonical cWW pair | geometric IL_4WF9_020 IL_01003.1 | |
| IL_7TOQ_142 | 1/A25S/1522:1526, 1/A25S/1648:1655 | No text annotation | homologous IL_8C3A_030 NA | |
| IL_7TOQ_143 | 1/A25S/1550:1551, 1/A25S/1576:1578 | Single bulged G | geometric IL_4V9F_026 IL_28408.1 | |
| IL_7TOQ_144 | 1/A25S/1551:1555, 1/A25S/1572:1576 | Triple sheared | homologous IL_8C3A_033 NA | |
| IL_7TOQ_145 | 1/A25S/1586:1589, 1/A25S/1605:1607 | Major groove platform with extra cWW | homologous IL_8C3A_034 NA | |
| IL_7TOQ_146 | 1/A25S/1590:1592, 1/A25S/1603:1604 | Single bulged U | homologous IL_8C3A_035 NA | |
| IL_7TOQ_147 | 1/A25S/1624:1626, 1/A25S/1636:1640 | No text annotation | homologous IL_8C3A_036 NA | |
| IL_7TOQ_148 | 1/A25S/1671:1673, 1/A25S/1682:1684 | Isolated non-canonical cWW pair | homologous IL_8C3A_037 NA | |
| IL_7TOQ_149 | 1/A25S/1686:1688, 1/A25S/1848:1851 | No text annotation | ||
| IL_7TOQ_150 | 1/A25S/1694:1721, 1/A25S/1841:1842 | No text annotation | ||
| IL_7TOQ_151 | 1/A25S/1723:1725, 1/A25S/1838:1839 | Single bulged G | homologous IL_8C3A_040 NA | |
| IL_7TOQ_152 | 1/A25S/1732:1737, 1/A25S/1792:1797 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_7A0S_027 NA | |
| IL_7TOQ_153 | 1/A25S/1737:1738, 1/A25S/1790:1792 | Minor groove platform | geometric IL_6DLR_003 IL_34520.1 | |
| IL_7TOQ_154 | 1/A25S/1739:1744, 1/A25S/1786:1789 | C-loop with bulged stacked A's | homologous IL_8C3A_043 NA | |
| IL_7TOQ_283 | 1/A25S/1746:1749, 1/A25S/1781:1784 | No text annotation | homologous IL_8C3A_481 NA | |
| IL_7TOQ_156 | 1/A25S/1749:1751, 1/A25S/1779:1781 | Isolated non-canonical cWW pair | geometric IL_5TBW_042 NA | |
| IL_7TOQ_157 | 1/A25S/1753:1756, 1/A25S/1776:1777 | Multiple bulged bases | geometric IL_4YAZ_007 IL_71421.1 | |
| IL_7TOQ_159 | 1/A25S/1814:1816, 1/A25S/1823:1824 | Single bulged G | geometric IL_4V88_442 NA | |
| IL_7TOQ_160 | 1/A25S/1858:1860, 1/A25S/1874:1876 | Isolated non-canonical cWW pair | homologous IL_8C3A_049 NA | |
| IL_7TOQ_161 | 1/A25S/1905:1909, 1/A25S/2067:2071 | UAA/GAN | homologous IL_8C3A_051 NA | |
| IL_7TOQ_162 | 1/A25S/1911:1918, 1/A25S/2064:2065 | SSU/LSU pseudoknot | geometric IL_7RQB_037 NA | |
| IL_7TOQ_163 | 1/A25S/1918:1920, 1/A25S/2063:2064 | No text annotation | ||
| IL_7TOQ_164 | 1/A25S/1920:1922, 1/A25S/2062:2063 | No text annotation | ||
| IL_7TOQ_165 | 1/A25S/1926:1933, 1/A25S/2053:2058 | No text annotation | homologous IL_8C3A_054 NA | |
| IL_7TOQ_166 | 1/A25S/1933:1944, 1/A25S/2038:2053 | No text annotation | geometric IL_5TBW_052 NA | |
| IL_7TOQ_167 | 1/A25S/1946:1948, 1/A25S/2035:2036 | Single bulged U | homologous IL_8C3A_056 NA | |
| IL_7TOQ_170 | 1/A25S/2083:2085, 1/A25S/2272:2273 | Single bulged C | geometric IL_3D0U_001 IL_05642.1 | |
| IL_7TOQ_171 | 1/A25S/2290:2292, 1/A25S/2342:2345 | No text annotation | homologous IL_8C3A_061 NA | |
| IL_7TOQ_172 | 1/A25S/2299:2301, 1/A25S/2334:2335 | Single bulged A | geometric IL_3OXE_001 IL_14190.1 | |
| IL_7TOQ_173 | 1/A25S/2302:2309, 1/A25S/2329:2333 | Kink-turn | homologous IL_8C3A_063 NA | |
| IL_7TOQ_174 | 1/A25S/2312:2314, 1/A25S/2325:2326 | Single bulged A | geometric IL_7RQB_033 NA | |
| IL_7TOQ_175 | 1/A25S/2358:2364, 1/A25S/3858:3863 | No text annotation | homologous IL_8C3A_065 NA | |
| IL_7TOQ_176 | 1/A25S/2415:2419, 1/A25S/2427:2429 | C-loop | geometric IL_4MGN_001 IL_63596.12 | |
| IL_7TOQ_177 | 1/A25S/2446:2450, 1/A25S/2509:2514 | UAA/GAN | homologous IL_8C3A_067 NA | |
| IL_7TOQ_179 | 1/A25S/2542:2547, 1/A25S/2772:2774 | Isolated non-canonical cWW pair | geometric IL_4RUM_001 NA | |
| IL_7TOQ_180 | 1/A25S/2589:2593, 1/A25S/2752:2756 | Triple sheared | homologous IL_8C3A_073 NA | |
| IL_7TOQ_181 | 1/A25S/2613:2614, 1/A25S/2724:2726 | Single bulged A | geometric IL_7A0S_012 IL_14190.1 | |
| IL_7TOQ_182 | 1/A25S/2614:2615, 1/A25S/2722:2724 | Single stack bend | homologous IL_8C3A_076 NA | |
| IL_7TOQ_183 | 1/A25S/2646:2648, 1/A25S/2685:2688 | Decoding loop related | geometric IL_2O3X_003 IL_61702.1 | |
| IL_7TOQ_184 | 1/A25S/2651:2653, 1/A25S/2681:2682 | Single bulged G | geometric IL_2IZN_001 IL_28408.1 | |
| IL_7TOQ_185 | 1/A25S/2656:2662, 1/A25S/2672:2678 | No text annotation | homologous IL_8C3A_079 NA | |
| IL_7TOQ_187 | 1/A25S/2832:2838, 1/A25S/3850:3853 | No text annotation | homologous IL_8C3A_080 NA | |
| IL_7TOQ_188 | 1/A25S/2844:2846, 1/A25S/3842:3844 | No text annotation | homologous IL_8C3A_081 NA | |
| IL_7TOQ_189 | 1/A25S/2847:2850, 1/A25S/3840:3841 | Major groove platform; stack outside cWW | geometric IL_5TBW_076 NA | |
| IL_7TOQ_287 | 1/A25S/2847:2855, 1/A25S/3837:3841 | No text annotation | homologous IL_8C3A_484 NA | |
| IL_7TOQ_190 | 1/A25S/2850:2855, 1/A25S/3837:3840 | No text annotation | homologous IL_8C3A_083 NA | |
| IL_7TOQ_191 | 1/A25S/2867:2872, 1/A25S/2877:2883 | No text annotation | homologous IL_8C3A_084 NA | |
| IL_7TOQ_192 | 1/A25S/2889:2891, 1/A25S/3610:3612 | Isolated non-canonical cWW pair | homologous IL_8C3A_085 NA | |
| IL_7TOQ_193 | 1/A25S/2896:2897, 1/A25S/3602:3605 | No text annotation | homologous IL_8C3A_086 NA | |
| IL_7TOQ_196 | 1/A25S/3632:3633, 1/A25S/3827:3829 | Single bulged A | homologous IL_8C3A_087 NA | |
| IL_7TOQ_197 | 1/A25S/3660:3665, 1/A25S/3677:3684 | No text annotation | homologous IL_8C3A_088 NA | |
| IL_7TOQ_198 | 1/A25S/3700:3703, 1/A25S/3749:3750 | No text annotation | homologous IL_8C3A_089 NA | |
| IL_7TOQ_199 | 1/A25S/3704:3705, 1/A25S/3745:3748 | Multiple bulged bases | homologous IL_8C3A_090 NA | |
| IL_7TOQ_200 | 1/A25S/3708:3714, 1/A25S/3739:3742 | No text annotation | ||
| IL_7TOQ_201 | 1/A25S/3715:3721, 1/A25S/3732:3738 | No text annotation | homologous IL_8C3A_093 NA | |
| IL_7TOQ_202 | 1/A25S/3780:3781, 1/A25S/3811:3814 | No text annotation | homologous IL_8C3A_094 NA | |
| IL_7TOQ_203 | 1/A25S/3781:3792, 1/A25S/3808:3811 | No text annotation | geometric IL_5TBW_090 NA | |
| IL_7TOQ_204 | 1/A25S/3895:3898, 1/A25S/4563:4565 | No text annotation | homologous IL_8C3A_096 NA | |
| IL_7TOQ_205 | 1/A25S/3900:3902, 1/A25S/4558:4561 | No text annotation | homologous IL_8C3A_097 NA | |
| IL_7TOQ_206 | 1/A25S/3913:3915, 1/A25S/4388:4389 | Single bulged U | homologous IL_8C3A_098 NA | |
| IL_7TOQ_207 | 1/A25S/3916:3917, 1/A25S/4384:4387 | Minor groove platform | homologous IL_8C3A_099 NA | |
| IL_7TOQ_208 | 1/A25S/3927:3929, 1/A25S/4181:4184 | No text annotation | homologous IL_8C3A_100 NA | |
| IL_7TOQ_213 | 1/A25S/4082:4088, 1/A25S/4161:4164 | No text annotation | homologous IL_8C3A_106 NA | |
| IL_7TOQ_215 | 1/A25S/4191:4192, 1/A25S/4202:4204 | Single bulged A | homologous IL_8C3A_107 NA | |
| IL_7TOQ_216 | 1/A25S/4243:4245, 1/A25S/4263:4267 | No text annotation | homologous IL_8C3A_108 NA | |
| IL_7TOQ_217 | 1/A25S/4291:4293, 1/A25S/4317:4318 | Single bulged A | geometric IL_5WWT_001 IL_14190.1 | |
| IL_7TOQ_218 | 1/A25S/4295:4298, 1/A25S/4312:4315 | Tandem non-canonical cWW pairs | homologous IL_8C3A_109 NA | |
| IL_7TOQ_219 | 1/A25S/4347:4350, 1/A25S/4364:4365 | Single stack bend | geometric IL_5J7L_032 NA | |
| IL_7TOQ_220 | 1/A25S/4400:4401, 1/A25S/4442:4444 | Major groove platform | geometric IL_5TBW_102 NA | |
| IL_7TOQ_221 | 1/A25S/4401:4403, 1/A25S/4440:4442 | Isolated non-canonical cWW pair | geometric IL_5J7L_259 NA | |
| IL_7TOQ_222 | 1/A25S/4403:4405, 1/A25S/4439:4440 | Major groove platform | homologous IL_8C3A_112 NA | |
| IL_7TOQ_223 | 1/A25S/4405:4407, 1/A25S/4435:4439 | Major groove minor groove platform with extra cWW | geometric IL_5TBW_105 NA | |
| IL_7TOQ_224 | 1/A25S/4412:4416, 1/A25S/4426:4430 | No text annotation | homologous IL_8C3A_114 NA | |
| IL_7TOQ_225 | 1/A25S/4453:4454, 1/A25S/4526:4528 | Major groove platform | homologous IL_8C3A_115 NA | |
| IL_7TOQ_226 | 1/A25S/4456:4458, 1/A25S/4520:4524 | No text annotation | homologous IL_8C3A_116 NA | |
| IL_7TOQ_227 | 1/A25S/4458:4459, 1/A25S/4517:4520 | Multiple bulged bases | geometric IL_5TBW_109 NA | |
| IL_7TOQ_228 | 1/A25S/4466:4468, 1/A25S/4489:4491 | No text annotation | geometric IL_4KR9_001 NA | |
| IL_7TOQ_291 | 1/A25S/4466:4470, 1/A25S/4485:4491 | No text annotation | ||
| IL_7TOQ_229 | 1/A25S/4468:4470, 1/A25S/4485:4489 | No text annotation | ||
| IL_7TOQ_230 | 1/A25S/4495:4497, 1/A25S/4503:4505 | Isolated non-canonical cWW pair | homologous IL_8C3A_120 NA | |
| IL_7TOQ_231 | 1/A25S/4537:4538, 1/A25S/4547:4549 | Single bulged A | geometric IL_2VPL_002 IL_14190.1 | |
| IL_7TOQ_232 | 1/A25S/4580:4582, 1/A25S/4721:4723 | Isolated cWH basepair | geometric IL_3CZW_002 NA | |
| IL_7TOQ_233 | 1/A25S/4582:4585, 1/A25S/4717:4721 | Double sheared | homologous IL_8C3A_123 NA | |
| IL_7TOQ_234 | 1/A25S/4590:4592, 1/A25S/4618:4620 | Isolated non-canonical cWW pair | homologous IL_8C3A_124 NA | |
| IL_7TOQ_235 | 1/A25S/4596:4603, 1/A25S/4608:4614 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8C3A_125 NA | |
| IL_7TOQ_236 | 1/A25S/4624:4629, 1/A25S/4669:4673 | No text annotation | ||
| IL_7TOQ_237 | 1/A25S/4632:4637, 1/A25S/4662:4666 | UAA/GAN related | homologous IL_8C3A_127 NA | |
| IL_7TOQ_238 | 1/A25S/4638:4640, 1/A25S/4659:4661 | Isolated cWH basepair | geometric IL_3R1C_018 IL_10892.1 | |
| IL_7TOQ_239 | 1/A25S/4641:4642, 1/A25S/4655:4658 | No text annotation | homologous IL_8C3A_128 NA | |
| IL_7TOQ_240 | 1/A25S/4681:4685, 1/A25S/4705:4709 | UAA/GAN | homologous IL_8C3A_129 NA | |
| IL_7TOQ_241 | 1/A25S/4739:4747, 1/A25S/4953:4960 | No text annotation | ||
| IL_7TOQ_302 | 1/A25S/4756:4766, 1/A25S/4868:4877 | No text annotation | ||
| IL_7TOQ_244 | 1/A25S/4885:4888, 1/A25S/4931:4934 | Tandem non-canonical cWW pairs | geometric IL_5EW4_002 IL_71194.1 | |
| IL_7TOQ_245 | 1/A25S/4890:4896, 1/A25S/4924:4929 | No text annotation | ||
| IL_7TOQ_247 | 1/A25S/4972:4975, 1/A25S/4983:4986 | Tandem non-canonical cWW pairs | homologous IL_8C3A_135 NA | |
| IL_7TOQ_248 | 1/A25S/4992:4994, 1/A25S/5057:5059 | Isolated non-canonical cWW pair | geometric IL_3DIL_006 IL_01003.1 | |
| IL_7TOQ_249 | 1/A25S/4996:4997, 1/A25S/5053:5055 | No text annotation | ||
| IL_7TOQ_250 | 1/A25S/5000:5002, 1/A25S/5045:5050 | No text annotation | homologous IL_8C3A_138 NA | |
| IL_7TOQ_251 | 1/A25S/5003:5009, 1/A25S/5039:5044 | No text annotation | ||
| IL_7TOQ_252 | 1/A25S/5012:5014, 1/A25S/5035:5036 | Single bulged C | geometric IL_4WF9_035 IL_05642.1 | |
| IL_7TOQ_253 | 1/A25S/5014:5017, 1/A25S/5032:5035 | Double sheared; A in syn | homologous IL_8C3A_141 NA | |
| IL_7TOQ_292 | 1/A58S/44:64, 1/A58S/95:99 | No text annotation | homologous IL_8C3A_150 NA | |
| IL_7TOQ_254 | 1/A58S/64:66, 1/A58S/92:95 | Isolated non-canonical cWW pair | geometric IL_5TBW_145 NA | |
| IL_7TOQ_255 | 1/A5S/15:16, 1/A5S/62:64 | Single bulged A | homologous IL_5TBW_372 NA | |
| IL_7TOQ_256 | 1/A5S/21:27, 1/A5S/52:57 | Minor groove platform related | homologous IL_5TBW_373 NA | |
| IL_7TOQ_257 | 1/A5S/28:29, 1/A5S/48:51 | Major groove minor groove platform; mini C-loop | homologous IL_7RQB_113 NA | |
| IL_7TOQ_258 | 1/A5S/32:36, 1/A5S/41:45 | Symmetric double minor groove platform | geometric IL_7RQB_114 NA | |
| IL_7TOQ_259 | 1/A5S/71:78, 1/A5S/98:104 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_377 NA | |
| IL_7TOQ_260 | 1/A5S/79:81, 1/A5S/95:97 | Isolated non-canonical cWW pair | geometric IL_7A0S_107 IL_71625.1 | |
| IL_7TOQ_261 | 1/A5S/82:85, 1/A5S/92:94 | Isolated non-canonical cWW pair | homologous IL_5TBW_378 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7TOQ_001 | Isolated non-canonical cWW pair | ||
| IL_7TOQ_262 | Tandem non-canonical cWW pairs | ||
| IL_7TOQ_002 | Isolated non-canonical cWW pair | ||
| IL_7TOQ_003 | Double sheared | ||
| IL_7TOQ_004 | No text annotation | ||
| IL_7TOQ_006 | No text annotation | ||
| IL_7TOQ_007 | No text annotation | ||
| IL_7TOQ_008 | Isolated non-canonical cWW pair | ||
| IL_7TOQ_263 | No text annotation | ||
| IL_7TOQ_009 | No text annotation | ||
| IL_7TOQ_010 | No text annotation | ||
| IL_7TOQ_011 | No text annotation | ||
| IL_7TOQ_012 | tWH-tWH-tHW-tHW | ||
| IL_7TOQ_013 | No text annotation | ||
| IL_7TOQ_014 | Double sheared with non-canonical cWW | ||
| IL_7TOQ_015 | No text annotation | ||
| IL_7TOQ_293 | No text annotation | ||
| IL_7TOQ_016 | No text annotation | ||
| IL_7TOQ_017 | Single bulged A | ||
| IL_7TOQ_018 | Single stack bend with SAM intercalation | ||
| IL_7TOQ_020 | No text annotation | ||
| IL_7TOQ_264 | No text annotation | ||
| IL_7TOQ_021 | No text annotation | ||
| IL_7TOQ_022 | Isolated non-canonical cWW pair | ||
| IL_7TOQ_023 | Isolated near basepair | ||
| IL_7TOQ_024 | Single bulged U | ||
| IL_7TOQ_025 | C-loop with extra cWW pair | ||
| IL_7TOQ_026 | Single bulged A | ||
| IL_7TOQ_027 | No text annotation | ||
| IL_7TOQ_265 | No text annotation | ||
| IL_7TOQ_028 | No text annotation | ||
| IL_7TOQ_029 | Double sheared | ||
| IL_7TOQ_030 | Isolated non-canonical cWW pair | ||
| IL_7TOQ_031 | Kink-turn related | ||
| IL_7TOQ_266 | No text annotation | ||
| IL_7TOQ_294 | Isolated non-canonical cWW pair | ||
| IL_7TOQ_036 | Tandem non-canonical cWW pairs | ||
| IL_7TOQ_295 | No text annotation | ||
| IL_7TOQ_037 | No text annotation | ||
| IL_7TOQ_038 | Isolated non-canonical cWW pair | ||
| IL_7TOQ_039 | No text annotation | ||
| IL_7TOQ_040 | Isolated non-canonical cWW pair | ||
| IL_7TOQ_041 | Tandem non-canonical cWW pairs | ||
| IL_7TOQ_267 | Isolated non-canonical cWW pair | ||
| IL_7TOQ_042 | Major groove platform | ||
| IL_7TOQ_268 | Isolated non-canonical cWW pair | ||
| IL_7TOQ_043 | Tandem non-canonical cWW pairs | ||
| IL_7TOQ_296 | Single bulged U | ||
| IL_7TOQ_044 | No text annotation | ||
| IL_7TOQ_051 | Tandem non-canonical cWW pairs | ||
| IL_7TOQ_269 | No text annotation | ||
| IL_7TOQ_052 | Isolated non-canonical cWW pair | ||
| IL_7TOQ_053 | Minor groove platform | ||
| IL_7TOQ_270 | No text annotation | ||
| IL_7TOQ_055 | Single bulged A | ||
| IL_7TOQ_056 | Single bulged G | ||
| IL_7TOQ_057 | C-loop | ||
| IL_7TOQ_058 | Isolated non-canonical cWW pair | ||
| IL_7TOQ_060 | Isolated non-canonical cWW pair | ||
| IL_7TOQ_061 | No text annotation | ||
| IL_7TOQ_271 | No text annotation | ||
| IL_7TOQ_062 | No text annotation | ||
| IL_7TOQ_063 | No text annotation | ||
| IL_7TOQ_064 | Single bulged U | ||
| IL_7TOQ_065 | Isolated cWS basepair | ||
| IL_7TOQ_272 | No text annotation | ||
| IL_7TOQ_066 | Minor groove platform with extra cWW | ||
| IL_7TOQ_067 | Single bulged A | ||
| IL_7TOQ_068 | Isolated non-canonical cWW pair | ||
| IL_7TOQ_069 | Minor groove platform | ||
| IL_7TOQ_070 | No text annotation | ||
| IL_7TOQ_071 | Minor groove platform | ||
| IL_7TOQ_273 | No text annotation | ||
| IL_7TOQ_072 | Single bulged G | ||
| IL_7TOQ_073 | Isolated non-canonical cWW pair | ||
| IL_7TOQ_274 | No text annotation | ||
| IL_7TOQ_074 | 180 degree turn | ||
| IL_7TOQ_075 | Isolated non-canonical cWW pair | ||
| IL_7TOQ_076 | No text annotation | ||
| IL_7TOQ_083 | Isolated non-canonical cWW pair | ||
| IL_7TOQ_084 | Double sheared | ||
| IL_7TOQ_086 | Triple sheared | ||
| IL_7TOQ_087 | Multiple bulged bases | ||
| IL_7TOQ_088 | No text annotation | ||
| IL_7TOQ_090 | Isolated non-canonical cWW pair | ||
| IL_7TOQ_099 | Single stack bend | ||
| IL_7TOQ_278 | Isolated non-canonical cWW pair | ||
| IL_7TOQ_110 | Tandem non-canonical cWW pairs | ||
| IL_7TOQ_111 | No text annotation | ||
| IL_7TOQ_280 | No text annotation | ||
| IL_7TOQ_115 | Single bulged U | ||
| IL_7TOQ_116 | Single stack bend | ||
| IL_7TOQ_117 | Multiple bulged bases | ||
| IL_7TOQ_118 | Single stack bend | ||
| IL_7TOQ_120 | Single stack bend | ||
| IL_7TOQ_121 | No text annotation | ||
| IL_7TOQ_127 | No text annotation | ||
| IL_7TOQ_128 | Single stack bend | ||
| IL_7TOQ_129 | No text annotation | ||
| IL_7TOQ_132 | Single stack bend | ||
| IL_7TOQ_133 | No text annotation | ||
| IL_7TOQ_155 | No text annotation | ||
| IL_7TOQ_284 | No text annotation | ||
| IL_7TOQ_158 | Isolated non-canonical cWW pair | ||
| IL_7TOQ_285 | No text annotation | ||
| IL_7TOQ_168 | Kink-turn | ||
| IL_7TOQ_286 | No text annotation | ||
| IL_7TOQ_169 | Major groove platform with extra cWW | ||
| IL_7TOQ_178 | Single stack bend | ||
| IL_7TOQ_186 | No text annotation | ||
| IL_7TOQ_194 | No text annotation | ||
| IL_7TOQ_299 | No text annotation | ||
| IL_7TOQ_288 | No text annotation | ||
| IL_7TOQ_195 | Single stack bend | ||
| IL_7TOQ_289 | No text annotation | ||
| IL_7TOQ_300 | No text annotation | ||
| IL_7TOQ_209 | No text annotation | ||
| IL_7TOQ_210 | Isolated non-canonical cWW pair | ||
| IL_7TOQ_211 | Partly complementary | ||
| IL_7TOQ_290 | No text annotation | ||
| IL_7TOQ_301 | No text annotation | ||
| IL_7TOQ_212 | No text annotation | ||
| IL_7TOQ_214 | Isolated non-canonical cWW pair | ||
| IL_7TOQ_242 | No text annotation | ||
| IL_7TOQ_243 | Tandem non-canonical cWW pairs | ||
| IL_7TOQ_246 | No text annotation | ||
| IL_7TOQ_303 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7TOQ_004 | 1/A18S/938:941, 1/A18S/985:993, 1/A18S/1000:1004 | No text annotation | homologous J3_8P9A_074 J3_23895.1 | |
| J3_7TOQ_040 | 1/A18S/1094:1096, 1/A18S/1136:1140, 1/A18S/1147:1151 | No text annotation | ||
| J3_7TOQ_008 | 1/A18S/1272:1277, 1/A18S/1320:1324, 1/A18S/1504:1510 | No text annotation | homologous J3_8C3A_041 NA | |
| J3_7TOQ_013 | 1/A25S/112:116, 1/A25S/155:160, 1/A25S/275:278 | No text annotation | ||
| J3_7TOQ_032 | 1/A25S/351:367, 1/A25S/374:379, 1/A58S/21:24 | No text annotation | homologous J3_8C3A_047 NA | |
| J3_7TOQ_014 | 1/A25S/380:387, 1/A25S/414:415, 1/A58S/19:20 | No text annotation | geometric J3_5J7L_036 NA | |
| J3_7TOQ_033 | 1/A25S/380:390, 1/A25S/401:415, 1/A58S/19:20 | No text annotation | homologous J3_8P9A_047 J3_17917.1 | |
| J3_7TOQ_041 | 1/A25S/451:455, 1/A25S/701:705, 1/A25S/1292:1296 | No text annotation | ||
| J3_7TOQ_015 | 1/A25S/982:984, 1/A25S/1070:1075, 1/A25S/1236:1273 | No text annotation | ||
| J3_7TOQ_035 | 1/A25S/982:984, 1/A25S/1070:1076, 1/A25S/1234:1273 | No text annotation | ||
| J3_7TOQ_016 | 1/A25S/1531:1537, 1/A25S/1622:1624, 1/A25S/1640:1643 | No text annotation | homologous J3_8C3A_003 NA | |
| J3_7TOQ_017 | 1/A25S/1545:1548, 1/A25S/1580:1584, 1/A25S/1609:1614 | No text annotation | homologous J3_8P9A_050 J3_21998.1 | |
| J3_7TOQ_018 | 1/A25S/1726:1727, 1/A25S/1802:1806, 1/A25S/1832:1837 | No text annotation | homologous J3_8P9A_051 J3_84137.1 | |
| J3_7TOQ_020 | 1/A25S/2393:2399, 1/A25S/2805:2807, 1/A25S/2819:2822 | No text annotation | homologous J3_8C3A_006 NA | |
| J3_7TOQ_021 | 1/A25S/2402:2405, 1/A25S/2785:2791, 1/A25S/2800:2802 | No text annotation | homologous J3_8C3A_007 NA | |
| J3_7TOQ_022 | 1/A25S/2440:2445, 1/A25S/2515:2519, 1/A25S/2536:2537 | No text annotation | homologous J3_8P9A_055 J3_94309.1 | |
| J3_7TOQ_036 | 1/A25S/2451:2456, 1/A25S/2465:2476, 1/A25S/2501:2508 | No text annotation | ||
| J3_7TOQ_037 | 1/A25S/2598:2602, 1/A25S/2737:2738, 1/A25S/2742:2747 | No text annotation | homologous J3_8P9A_058 J3_08594.1 | |
| J3_7TOQ_023 | 1/A25S/3937:3939, 1/A25S/4074:4078, 1/A25S/4168:4173 | No text annotation | geometric J3_8VTW_006 NA | |
| J3_7TOQ_024 | 1/A25S/4091:4094, 1/A25S/4114:4129, 1/A25S/4155:4158 | No text annotation | homologous J3_8C3A_009 NA | |
| J3_7TOQ_038 | 1/A25S/4228:4230, 1/A25S/4331:4342, 1/A25S/4370:4375 | No text annotation | homologous J3_8C3A_056 NA | |
| J3_7TOQ_025 | 1/A25S/4241:4243, 1/A25S/4267:4269, 1/A25S/4278:4283 | No text annotation | homologous J3_8C3A_010 NA | |
| J3_7TOQ_026 | 1/A25S/4463:4466, 1/A25S/4491:4493, 1/A25S/4507:4513 | No text annotation | homologous J3_8C3A_011 NA | |
| J3_7TOQ_039 | 1/A25S/4749:4754, 1/A25S/4879:4883, 1/A25S/4936:4951 | No text annotation | ||
| J3_7TOQ_027 | 1/A25S/4970:4972, 1/A25S/4986:4991, 1/A25S/5060:5063 | No text annotation | ||
| J3_7TOQ_028 | 1/A58S/44:55, 1/A58S/62:64, 1/A58S/95:99 | No text annotation | geometric J3_4WF9_001 J3_47707.1 | |
| J3_7TOQ_029 | 1/A5S/9:14, 1/A5S/65:66, 1/A5S/109:110 | No text annotation | homologous J3_5TBW_045 NA | |
| J4_7TOQ_001 | 1/A18S/98:106, 1/A18S/355:357, 1/A18S/405:409, 1/A18S/431:432 | No text annotation | homologous J4_8C3A_021 NA | |
| J4_7TOQ_002 | 1/A18S/671:673, 1/A18S/1032:1037, 1/A18S/1078:1089, 1/A18S/1160:1161 | No text annotation | homologous J4_8C3A_022 NA | |
| J4_7TOQ_003 | 1/A25S/111:112, 1/A25S/278:283, 1/A25S/304:310, 1/A25S/327:330 | No text annotation | homologous J4_8P9A_012 J4_94698.1 | |
| J4_7TOQ_004 | 1/A25S/196:199, 1/A25S/215:222, 1/A25S/226:228, 1/A25S/240:244 | No text annotation | ||
| J4_7TOQ_005 | 1/A25S/712:713, 1/A25S/955:961, 1/A25S/971:982, 1/A25S/1273:1284 | No text annotation | ||
| J4_7TOQ_006 | 1/A25S/2365:2371, 1/A25S/2389:2391, 1/A25S/2824:2829, 1/A25S/3856:3857 | No text annotation | ||
| J4_7TOQ_007 | 1/A25S/2406:2410, 1/A25S/2434:2439, 1/A25S/2538:2539, 1/A25S/2777:2784 | No text annotation | homologous J4_8C3A_004 NA | |
| J4_7TOQ_008 | 1/A25S/2549:2555, 1/A25S/2572:2576, 1/A25S/2585:2589, 1/A25S/2756:2770 | No text annotation | ||
| J4_7TOQ_009 | 1/A25S/2618:2619, 1/A25S/2637:2642, 1/A25S/2692:2698, 1/A25S/2718:2719 | No text annotation | ||
| J4_7TOQ_010 | 1/A25S/3634:3638, 1/A25S/3650:3654, 1/A25S/3690:3694, 1/A25S/3821:3826 | No text annotation | homologous J4_8C3A_006 NA | |
| J4_7TOQ_011 | 1/A25S/3696:3698, 1/A25S/3752:3753, 1/A25S/3771:3780, 1/A25S/3814:3819 | No text annotation | homologous J4_8P9A_018 J4_42306.1 | |
| J4_7TOQ_012 | 1/A25S/4231:4235, 1/A25S/4289:4291, 1/A25S/4318:4319, 1/A25S/4328:4330 | No text annotation | ||
| J4_7TOQ_013 | 1/A25S/4587:4590, 1/A25S/4620:4621, 1/A25S/4676:4678, 1/A25S/4712:4715 | No text annotation | ||
| J5_7TOQ_006 | 1/A25S/19:21, 1/A58S/35:42, 1/A58S/101:106, 1/A58S/113:114, 1/A58S/136:138 | No text annotation | homologous J5_8P9A_010 J5_27223.1 | |
| J5_7TOQ_007 | 1/A25S/1335:1340, 1/A25S/1516:1519, 1/A25S/1658:1661, 1/A25S/2288:2290, 1/A25S/2345:2351 | No text annotation | homologous J5_8C3A_002 NA | |
| J5_7TOQ_008 | 1/A25S/2855:2863, 1/A25S/2887:2888, 1/A25S/3613:3614, 1/A25S/3618:3626, 1/A25S/3835:3837 | No text annotation | homologous J5_8C3A_004 NA | |
| J5_7TOQ_009 | 1/A25S/3903:3910, 1/A25S/4392:4400, 1/A25S/4444:4453, 1/A25S/4528:4534, 1/A25S/4552:4557 | No text annotation | ||
| J5_7TOQ_010 | 1/A25S/3920:3923, 1/A25S/4188:4191, 1/A25S/4204:4205, 1/A25S/4227:4228, 1/A25S/4375:4381 | No text annotation | homologous J5_8C3A_006 NA | |
| J6_7TOQ_001 | 1/A25S/21:26, 1/A25S/57:67, 1/A25S/74:78, 1/A25S/105:109, 1/A25S/332:339, 1/A58S/33:35 | No text annotation | ||
| J6_7TOQ_002 | 1/A25S/1352:1355, 1/A25S/1384:1388, 1/A25S/1395:1399, 1/A25S/1418:1421, 1/A25S/1464:1466, 1/A25S/1499:1504 | No text annotation | ||
| J6_7TOQ_003 | 1/A25S/3920:3923, 1/A25S/4188:4191, 1/A25S/4204:4205, 1/A25S/4227:4230, 1/A25S/4331:4342, 1/A25S/4370:4381 | No text annotation | ||
| J7_7TOQ_001 | 1/A25S/1666:1671, 1/A25S/1684:1685, 1/A25S/1852:1855, 1/A25S/1879:1884, 1/A25S/1895:1899, 1/A25S/2077:2078, 1/A25S/2278:2283 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_7TOQ_001 | No text annotation | ||
| J3_7TOQ_002 | No text annotation | ||
| J3_7TOQ_030 | No text annotation | ||
| J3_7TOQ_003 | No text annotation | ||
| J3_7TOQ_005 | No text annotation | ||
| J3_7TOQ_031 | No text annotation | ||
| J3_7TOQ_006 | No text annotation | ||
| J3_7TOQ_007 | No text annotation | ||
| J3_7TOQ_009 | No text annotation | ||
| J3_7TOQ_010 | No text annotation | ||
| J3_7TOQ_011 | No text annotation | ||
| J3_7TOQ_012 | No text annotation | ||
| J3_7TOQ_034 | No text annotation | ||
| J3_7TOQ_042 | No text annotation | ||
| J3_7TOQ_019 | No text annotation | ||
| J4_7TOQ_014 | No text annotation | ||
| J5_7TOQ_001 | No text annotation | ||
| J5_7TOQ_002 | No text annotation | ||
| J5_7TOQ_003 | No text annotation | ||
| J5_7TOQ_004 | No text annotation | ||
| J5_7TOQ_005 | No text annotation |
Coloring options: