HL_7TOQ_011

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGACCCG

Length

7 nucleotides

Bulged bases

7TOQ|1|A18S|A|500

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOQ_011 not in the Motif Atlas

Geometric match to HL_4WF9_011

Geometric discrepancy: 0.209

The information below is about HL_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

7TOQ|1|A18S|C|498
7TOQ|1|A18S|G|499
7TOQ|1|A18S|A|500
7TOQ|1|A18S|C|501
7TOQ|1|A18S|C|502
7TOQ|1|A18S|C|503
7TOQ|1|A18S|G|504

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS04

40S ribosomal protein S4

Chain AS24

40S ribosomal protein S24