HL_7TOQ_015

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGGCCCGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOQ_015 not in the Motif Atlas

Geometric match to HL_4QLM_002

Geometric discrepancy: 0.3985

The information below is about HL_4QLM_002

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_00911.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

7TOQ|1|A18S|C|745
7TOQ|1|A18S|G|788
7TOQ|1|A18S|G|789
7TOQ|1|A18S|C|790
7TOQ|1|A18S|C|791
7TOQ|1|A18S|C|792
7TOQ|1|A18S|G|793
7TOQ|1|A18S|A|794
7TOQ|1|A18S|A|795
7TOQ|1|A18S|G|796

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS04

40S ribosomal protein S4

Chain AS06

40S ribosomal protein S6

Chain AS11

40S ribosomal protein S11