HL_7TOQ_018

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAUUUUGUUGGUUUUCG

Length

17 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOQ_018 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.3409

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.3

Basepair signature

cWW-F

Number of instances in this motif group

5

Unit IDs

7TOQ|1|A18S|U|885
7TOQ|1|A18S|A|886
7TOQ|1|A18S|U|887
7TOQ|1|A18S|U|888
7TOQ|1|A18S|U|889
7TOQ|1|A18S|U|890
7TOQ|1|A18S|G|891
7TOQ|1|A18S|U|892
7TOQ|1|A18S|U|893
7TOQ|1|A18S|G|894
7TOQ|1|A18S|G|895
7TOQ|1|A18S|U|896
7TOQ|1|A18S|U|897
7TOQ|1|A18S|U|898
7TOQ|1|A18S|U|899
7TOQ|1|A18S|C|900
7TOQ|1|A18S|G|901

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS06

40S ribosomal protein S6