HL_7TOQ_024

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGCAAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOQ_024 not in the Motif Atlas

Geometric match to HL_1Q96_001

Geometric discrepancy: 0.1007

The information below is about HL_1Q96_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

7TOQ|1|A18S|U|1178
7TOQ|1|A18S|G|1179
7TOQ|1|A18S|C|1180
7TOQ|1|A18S|A|1181
7TOQ|1|A18S|A|1182
7TOQ|1|A18S|A|1183

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain A25S

Large subunit ribosomal RNA; LSU rRNA

Chain AL41

eL41

Chain AL43

60S ribosomal protein L37a