HL_7TOQ_039

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGCGGCG

Length

7 nucleotides

Bulged bases

7TOQ|1|A25S|G|134, 7TOQ|1|A25S|G|135

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOQ_039 not in the Motif Atlas

Geometric match to HL_7RQB_011

Geometric discrepancy: 0.2114

The information below is about HL_7RQB_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70546.1

Basepair signature

cWW-F

Number of instances in this motif group

18

Unit IDs

7TOQ|1|A25S|C|131
7TOQ|1|A25S|G|132
7TOQ|1|A25S|C|133
7TOQ|1|A25S|G|134
7TOQ|1|A25S|G|135
7TOQ|1|A25S|C|136
7TOQ|1|A25S|G|137

Current chains

Chain A25S

28S rRNA

Nearby chains

Chain A58S

5.8S ribosomal RNA; 5.8S rRNA

Chain AL15

60S ribosomal protein L15

Chain AL35

60S ribosomal protein L35

Chain AL37

60S ribosomal protein L37