HL_7TOQ_040

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

7TOQ|1|A25S|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOQ_040 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.2382

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

7TOQ|1|A25S|U|204
7TOQ|1|A25S|C|205
7TOQ|1|A25S|U|206
7TOQ|1|A25S|G|207
7TOQ|1|A25S|A|208
7TOQ|1|A25S|U|209
7TOQ|1|A25S|C|210
7TOQ|1|A25S|G|211

Current chains

Chain A25S

28S rRNA

Nearby chains

Chain AL26

60S ribosomal protein L26

Chain AL32

60S ribosomal protein L32