HL_7TOQ_048

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAGACCCG

Length

9 nucleotides

Bulged bases

7TOQ|1|A25S|A|966, 7TOQ|1|A25S|C|967

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOQ_048 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.1693

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

7TOQ|1|A25S|C|962
7TOQ|1|A25S|G|963
7TOQ|1|A25S|A|964
7TOQ|1|A25S|G|965
7TOQ|1|A25S|A|966
7TOQ|1|A25S|C|967
7TOQ|1|A25S|C|968
7TOQ|1|A25S|C|969
7TOQ|1|A25S|G|970

Current chains

Chain A25S

28S rRNA

Nearby chains

Chain AL04

60S ribosomal protein L4

Chain AL06

60S ribosomal protein L6

Chain AL07

uL30