HL_7TOQ_053

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCGCUC

Length

6 nucleotides

Bulged bases

7TOQ|1|A25S|G|1408, 7TOQ|1|A25S|U|1410

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOQ_053 not in the Motif Atlas

Geometric match to HL_4OOG_001

Geometric discrepancy: 0.2945

The information below is about HL_4OOG_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_12626.2

Basepair signature

cWW-F

Number of instances in this motif group

17

Unit IDs

7TOQ|1|A25S|G|1406
7TOQ|1|A25S|C|1407
7TOQ|1|A25S|G|1408
7TOQ|1|A25S|C|1409
7TOQ|1|A25S|U|1410
7TOQ|1|A25S|C|1411

Current chains

Chain A25S

28S rRNA

Nearby chains

Chain AL29

eL29