HL_7TOQ_060

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAAACG

Length

7 nucleotides

Bulged bases

7TOQ|1|A25S|C|1768

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOQ_060 not in the Motif Atlas

Geometric match to HL_5TBW_023

Geometric discrepancy: 0.3023

The information below is about HL_5TBW_023

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7TOQ|1|A25S|C|1763
7TOQ|1|A25S|G|1764
7TOQ|1|A25S|A|1765
7TOQ|1|A25S|A|1766
7TOQ|1|A25S|A|1767
7TOQ|1|A25S|C|1768
7TOQ|1|A25S|G|1769

Current chains

Chain A25S

28S rRNA

Nearby chains

Chain AL11

60S ribosomal protein L11

Chain AS15

40S ribosomal protein S15