HL_7TOQ_061

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGGUGUG

Length

8 nucleotides

Bulged bases

7TOQ|1|A25S|G|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOQ_061 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3921

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

7TOQ|1|A25S|C|1816
7TOQ|1|A25S|U|1817
7TOQ|1|A25S|G|1818
7TOQ|1|A25S|G|1819
7TOQ|1|A25S|U|1820
7TOQ|1|A25S|G|1821
7TOQ|1|A25S|U|1822
7TOQ|1|A25S|G|1823

Current chains

Chain A25S

28S rRNA

Nearby chains

Chain AL05

60S ribosomal protein L5

Chain AL21

60S ribosomal protein L21

Chain AL29

eL29