HL_7TOQ_070

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAGCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOQ_070 not in the Motif Atlas

Homologous match to HL_8C3A_033

Geometric discrepancy: 0.1496

The information below is about HL_8C3A_033

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7TOQ|1|A25S|C|2458
7TOQ|1|A25S|G|2459
7TOQ|1|A25S|A|2460
7TOQ|1|A25S|G|2461
7TOQ|1|A25S|C|2462
7TOQ|1|A25S|G|2463

Current chains

Chain A25S

28S rRNA

Nearby chains

Chain AL15

60S ribosomal protein L15

Chain AL37

60S ribosomal protein L37