HL_7TOQ_075

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUCUCUUU

Length

9 nucleotides

Bulged bases

7TOQ|1|A25S|U|2631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOQ_075 not in the Motif Atlas

Homologous match to HL_8C3A_037

Geometric discrepancy: 0.2215

The information below is about HL_8C3A_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7TOQ|1|A25S|G|2624
7TOQ|1|A25S|U|2625
7TOQ|1|A25S|U|2626
7TOQ|1|A25S|C|2627
7TOQ|1|A25S|U|2628
7TOQ|1|A25S|C|2629
7TOQ|1|A25S|U|2630
7TOQ|1|A25S|U|2631
7TOQ|1|A25S|U|2632

Current chains

Chain A25S

28S rRNA

Nearby chains

Chain AL19

60S ribosomal protein L19

Chain AL22

eL22