HL_7TOQ_090

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCGAGG

Length

6 nucleotides

Bulged bases

7TOQ|1|A25S|G|4104, 7TOQ|1|A25S|A|4105

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOQ_090 not in the Motif Atlas

Geometric match to HL_6CK5_001

Geometric discrepancy: 0.3646

The information below is about HL_6CK5_001

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

60

Unit IDs

7TOQ|1|A25S|C|4102
7TOQ|1|A25S|C|4103
7TOQ|1|A25S|G|4104
7TOQ|1|A25S|A|4105
7TOQ|1|A25S|G|4106
7TOQ|1|A25S|G|4107

Current chains

Chain A25S

28S rRNA

Nearby chains

Chain AS01

40S ribosomal protein S3a