HL_7TOQ_092

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

7TOQ|1|A25S|G|4195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOQ_092 not in the Motif Atlas

Homologous match to HL_8C3A_055

Geometric discrepancy: 0.1201

The information below is about HL_8C3A_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

7TOQ|1|A25S|C|4193
7TOQ|1|A25S|U|4194
7TOQ|1|A25S|G|4195
7TOQ|1|A25S|G|4196
7TOQ|1|A25S|G|4197
7TOQ|1|A25S|G|4198
7TOQ|1|A25S|C|4199
7TOQ|1|A25S|G|4200
7TOQ|1|A25S|G|4201

Current chains

Chain A25S

28S rRNA

Nearby chains

Chain AL10

Ribosomal protein L10

Chain AL29

eL29

Chain PR

PR20, ALS/FTD dipeptide repeat protein