HL_7TOQ_097

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOQ_097 not in the Motif Atlas

Homologous match to HL_8C3A_060

Geometric discrepancy: 0.0896

The information below is about HL_8C3A_060

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7TOQ|1|A25S|U|4321
7TOQ|1|A25S|G|4322
7TOQ|1|A25S|A|4323
7TOQ|1|A25S|A|4324
7TOQ|1|A25S|A|4325
7TOQ|1|A25S|G|4326

Current chains

Chain A25S

28S rRNA

Nearby chains

Chain AL05

60S ribosomal protein L5

Chain AL21

60S ribosomal protein L21

Chain AL42

eL42