HL_7TOQ_101

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUGUUCA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOQ_101 not in the Motif Atlas

Geometric match to HL_5TBW_063

Geometric discrepancy: 0.151

The information below is about HL_5TBW_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36430.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7TOQ|1|A25S|U|4497
7TOQ|1|A25S|U|4498
7TOQ|1|A25S|G|4499
7TOQ|1|A25S|U|4500
7TOQ|1|A25S|U|4501
7TOQ|1|A25S|C|4502
7TOQ|1|A25S|A|4503

Current chains

Chain A25S

28S rRNA

Nearby chains

Chain AL03

60S ribosomal protein L3