HL_7TOQ_102

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOQ_102 not in the Motif Atlas

Homologous match to HL_8C3A_065

Geometric discrepancy: 0.1592

The information below is about HL_8C3A_065

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7TOQ|1|A25S|C|4540
7TOQ|1|A25S|G|4541
7TOQ|1|A25S|U|4542
7TOQ|1|A25S|G|4543
7TOQ|1|A25S|A|4544
7TOQ|1|A25S|G|4545

Current chains

Chain A25S

28S rRNA

Nearby chains

Chain AL02

uL2

Chain PR

PR20, ALS/FTD dipeptide repeat protein