HL_7TOQ_106

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGGAAAGGGG

Length

10 nucleotides

Bulged bases

7TOQ|1|A25S|A|4910, 7TOQ|1|A25S|A|4911, 7TOQ|1|A25S|G|4914

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOQ_106 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.1142

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

7TOQ|1|A25S|C|4906
7TOQ|1|A25S|G|4907
7TOQ|1|A25S|G|4908
7TOQ|1|A25S|A|4909
7TOQ|1|A25S|A|4910
7TOQ|1|A25S|A|4911
7TOQ|1|A25S|G|4912
7TOQ|1|A25S|G|4913
7TOQ|1|A25S|G|4914
7TOQ|1|A25S|G|4915

Current chains

Chain A25S

28S rRNA

Nearby chains

Chain AL03

60S ribosomal protein L3

Chain AL16

uL13