HL_7TOQ_111

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CACUUG

Length

6 nucleotides

Bulged bases

7TOQ|1|A58S|U|111

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOQ_111 not in the Motif Atlas

Geometric match to HL_6CK5_001

Geometric discrepancy: 0.3869

The information below is about HL_6CK5_001

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

49

Unit IDs

7TOQ|1|A58S|C|107
7TOQ|1|A58S|A|108
7TOQ|1|A58S|C|109
7TOQ|1|A58S|U|110
7TOQ|1|A58S|U|111
7TOQ|1|A58S|G|112

Current chains

Chain A58S

5.8S rRNA

Nearby chains

Chain A25S

Large subunit ribosomal RNA; LSU rRNA

Chain AL25

uL23

Chain AL37

60S ribosomal protein L37

Chain AL39

eL39