HL_7TOQ_115

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAGCCUGGUAG

Length

11 nucleotides

Bulged bases

7TOQ|1|PTRN|C|16, 7TOQ|1|PTRN|G|18, 7TOQ|1|PTRN|G|19, 7TOQ|1|PTRN|U|20

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOQ_115 not in the Motif Atlas

Geometric match to HL_2AZX_004

Geometric discrepancy: 0.1328

The information below is about HL_2AZX_004

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

7TOQ|1|PTRN|C|13
7TOQ|1|PTRN|A|14
7TOQ|1|PTRN|G|15
7TOQ|1|PTRN|C|16
7TOQ|1|PTRN|C|17
7TOQ|1|PTRN|U|17|||A
7TOQ|1|PTRN|G|18
7TOQ|1|PTRN|G|19
7TOQ|1|PTRN|U|20
7TOQ|1|PTRN|A|21
7TOQ|1|PTRN|G|22

Current chains

Chain PTRN

tRNAfMet

Nearby chains

Chain A25S

Large subunit ribosomal RNA; LSU rRNA