HL_7TOQ_116

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCUCAUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOQ_116 not in the Motif Atlas

Geometric match to HL_4TUE_034

Geometric discrepancy: 0.2178

The information below is about HL_4TUE_034

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_06059.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

51

Unit IDs

7TOQ|1|PTRN|G|31
7TOQ|1|PTRN|C|32
7TOQ|1|PTRN|U|33
7TOQ|1|PTRN|C|34
7TOQ|1|PTRN|A|35
7TOQ|1|PTRN|U|36
7TOQ|1|PTRN|A|37
7TOQ|1|PTRN|A|38
7TOQ|1|PTRN|C|39

Current chains

Chain PTRN

tRNAfMet

Nearby chains

Chain A18S

Small subunit ribosomal RNA; SSU rRNA

Chain AS16

uS9

Chain MRNA

RNA (5'-R(*CP*AP*CP*AP*UP*GP*UP*UP*CP*C)-3')