HL_7TOQ_117

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUCAAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOQ_117 not in the Motif Atlas

Geometric match to HL_1U0B_003

Geometric discrepancy: 0.1831

The information below is about HL_1U0B_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

7TOQ|1|PTRN|G|53
7TOQ|1|PTRN|U|54
7TOQ|1|PTRN|U|55
7TOQ|1|PTRN|C|56
7TOQ|1|PTRN|A|57
7TOQ|1|PTRN|A|58
7TOQ|1|PTRN|A|59
7TOQ|1|PTRN|U|60
7TOQ|1|PTRN|C|61

Current chains

Chain PTRN

tRNAfMet

Nearby chains

Chain A25S

Large subunit ribosomal RNA; LSU rRNA