HL_7TOR_012

3D structure

PDB id

7TOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUUCG

Length

6 nucleotides

Bulged bases

7TOR|1|A18S|U|541

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOR_012 not in the Motif Atlas

Geometric match to HL_5J7L_179

Geometric discrepancy: 0.3216

The information below is about HL_5J7L_179

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_04783.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

7TOR|1|A18S|C|539
7TOR|1|A18S|U|540
7TOR|1|A18S|U|541
7TOR|1|A18S|U|542
7TOR|1|A18S|C|543
7TOR|1|A18S|G|544

Current chains

Chain A18S

18S rRNA

Nearby chains