HL_7TOR_027

3D structure

PDB id

7TOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUUAAUUC

Length

8 nucleotides

Bulged bases

7TOR|1|A18S|U|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOR_027 not in the Motif Atlas

Geometric match to HL_4LFB_025

Geometric discrepancy: 0.1636

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

7TOR|1|A18S|G|1366
7TOR|1|A18S|U|1367
7TOR|1|A18S|U|1368
7TOR|1|A18S|A|1369
7TOR|1|A18S|A|1370
7TOR|1|A18S|U|1371
7TOR|1|A18S|U|1372
7TOR|1|A18S|C|1373

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS17

40S ribosomal protein S17