HL_7TOR_029

3D structure

PDB id

7TOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGUUCAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOR_029 not in the Motif Atlas

Geometric match to HL_1F1T_001

Geometric discrepancy: 0.3938

The information below is about HL_1F1T_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59843.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7TOR|1|A18S|C|1460
7TOR|1|A18S|G|1461
7TOR|1|A18S|U|1462
7TOR|1|A18S|U|1463
7TOR|1|A18S|C|1464
7TOR|1|A18S|A|1465
7TOR|1|A18S|G|1466

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain ARAC

Receptor of activated protein C kinase 1

Chain AS17

40S ribosomal protein S17