HL_7TOR_053

3D structure

PDB id

7TOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAGUCCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOR_053 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.3844

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

7TOR|1|A28S|C|1436
7TOR|1|A28S|A|1443
7TOR|1|A28S|G|1444
7TOR|1|A28S|U|1445
7TOR|1|A28S|C|1446
7TOR|1|A28S|C|1447
7TOR|1|A28S|G|1448

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL04

60S ribosomal protein L4

Chain AL18

eL18

Chain AL29

eL29