HL_7TOR_062

3D structure

PDB id

7TOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAUGAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOR_062 not in the Motif Atlas

Homologous match to HL_8C3A_026

Geometric discrepancy: 0.2256

The information below is about HL_8C3A_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_44398.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7TOR|1|A28S|G|1886
7TOR|1|A28S|G|1887
7TOR|1|A28S|A|1888
7TOR|1|A28S|U|1889
7TOR|1|A28S|G|1890
7TOR|1|A28S|A|1891
7TOR|1|A28S|A|1892
7TOR|1|A28S|C|1893

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain A5S

5S ribosomal RNA; 5S rRNA

Chain AL32

60S ribosomal protein L32

Chain AL33

60S ribosomal protein L35a