HL_7TOR_064

3D structure

PDB id

7TOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAGUGUGUAACAACUC

Length

16 nucleotides

Bulged bases

7TOR|1|A28S|A|2002

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOR_064 not in the Motif Atlas

Geometric match to HL_5TBW_227

Geometric discrepancy: 0.3964

The information below is about HL_5TBW_227

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02373.2

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

7TOR|1|A28S|G|2001
7TOR|1|A28S|A|2002
7TOR|1|A28S|G|2003
7TOR|1|A28S|U|2004
7TOR|1|A28S|G|2005
7TOR|1|A28S|U|2006
7TOR|1|A28S|G|2007
7TOR|1|A28S|U|2008
7TOR|1|A28S|A|2009
7TOR|1|A28S|A|2010
7TOR|1|A28S|C|2011
7TOR|1|A28S|A|2012
7TOR|1|A28S|A|2013
7TOR|1|A28S|C|2014
7TOR|1|A28S|U|2015
7TOR|1|A28S|C|2016

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL12

uL11