HL_7TOR_068

3D structure

PDB id

7TOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

7TOR|1|A28S|G|2421, 7TOR|1|A28S|U|2425

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOR_068 not in the Motif Atlas

Homologous match to HL_8C3A_032

Geometric discrepancy: 0.2227

The information below is about HL_8C3A_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

7TOR|1|A28S|A|2420
7TOR|1|A28S|G|2421
7TOR|1|A28S|C|2422
7TOR|1|A28S|A|2423
7TOR|1|A28S|G|2424
7TOR|1|A28S|U|2425
7TOR|1|A28S|U|2426

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL17

60S ribosomal protein L17

Chain AL19

60S ribosomal protein L19