3D structure

PDB id
7TOR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
AGCAGUU
Length
7 nucleotides
Bulged bases
7TOR|1|A28S|G|2421, 7TOR|1|A28S|U|2425
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7TOR_068 not in the Motif Atlas
Homologous match to HL_8C3A_032
Geometric discrepancy: 0.2227
The information below is about HL_8C3A_032
Detailed Annotation
Pseudoknot geometry with 3' bulge
Broad Annotation
No text annotation
Motif group
HL_40756.1
Basepair signature
cWW-F-F-F
Number of instances in this motif group
14

Unit IDs

7TOR|1|A28S|A|2420
7TOR|1|A28S|G|2421
7TOR|1|A28S|C|2422
7TOR|1|A28S|A|2423
7TOR|1|A28S|G|2424
7TOR|1|A28S|U|2425
7TOR|1|A28S|U|2426

Current chains

Chain A28S
28S rRNA

Nearby chains

Chain AL17
60S ribosomal protein L17
Chain AL19
60S ribosomal protein L19

Coloring options:


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