HL_7TOR_068
3D structure
- PDB id
- 7TOR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AGCAGUU
- Length
- 7 nucleotides
- Bulged bases
- 7TOR|1|A28S|G|2421, 7TOR|1|A28S|U|2425
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7TOR_068 not in the Motif Atlas
- Homologous match to HL_8C3A_032
- Geometric discrepancy: 0.2227
- The information below is about HL_8C3A_032
- Detailed Annotation
- Pseudoknot geometry with 3' bulge
- Broad Annotation
- No text annotation
- Motif group
- HL_40756.1
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
7TOR|1|A28S|A|2420
7TOR|1|A28S|G|2421
7TOR|1|A28S|C|2422
7TOR|1|A28S|A|2423
7TOR|1|A28S|G|2424
7TOR|1|A28S|U|2425
7TOR|1|A28S|U|2426
Current chains
- Chain A28S
- 28S rRNA
Nearby chains
- Chain AL17
- 60S ribosomal protein L17
- Chain AL19
- 60S ribosomal protein L19
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