3D structure

PDB id
7TOR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
GUUCGCC
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7TOR_075 not in the Motif Atlas
Homologous match to HL_8C3A_038
Geometric discrepancy: 0.5416
The information below is about HL_8C3A_038
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75033.1
Basepair signature
cWW-cWW-F-F-F
Number of instances in this motif group
3

Unit IDs

7TOR|1|A28S|G|2664
7TOR|1|A28S|U|2665
7TOR|1|A28S|U|2666
7TOR|1|A28S|C|2667
7TOR|1|A28S|G|2668
7TOR|1|A28S|C|2669
7TOR|1|A28S|C|2670

Current chains

Chain A28S
28S rRNA

Nearby chains

Chain AL19
60S ribosomal protein L19
Chain AL43
60S ribosomal protein L37a

Coloring options:


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