HL_7TOS_012

3D structure

PDB id

7TOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

7TOS|1|16S|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOS_012 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.1865

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

7TOS|1|16S|G|462
7TOS|1|16S|U|463
7TOS|1|16S|U|464
7TOS|1|16S|A|465
7TOS|1|16S|A|466
7TOS|1|16S|U|467
7TOS|1|16S|A|468
7TOS|1|16S|C|469
7TOS|1|16S|C|470

Current chains

Chain 16S

16S ribosomal RNA

Nearby chains