7TOS Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
HL_7TOS_001 | 1/16S/12:22 | No text annotation | homologous HL_5J7L_001 HL_89881.5 | |
HL_7TOS_002 | 1/16S/78:91 | No text annotation | ||
HL_7TOS_003 | 1/16S/158:163 | GNRA | homologous HL_5J7L_003 HL_37824.8 | |
HL_7TOS_004 | 1/16S/186:191 | GNRA | homologous HL_5J7L_004 HL_37824.8 | |
HL_7TOS_005 | 1/16S/206:213 | No text annotation | geometric HL_2Y9H_005 HL_86870.2 | |
HL_7TOS_006 | 1/16S/259:267 | GNRA related | homologous HL_5J7L_006 HL_84299.4 | |
HL_7TOS_007 | 1/16S/296:301 | GNRA | homologous HL_5J7L_007 HL_37824.8 | |
HL_7TOS_008 | 1/16S/320:333 | No text annotation | homologous HL_5J7L_008 HL_81205.3 | |
HL_7TOS_009 | 1/16S/342:347 | UNCG | homologous HL_4LFB_009 HL_34617.5 | |
HL_7TOS_010 | 1/16S/379:384 | GNRA | homologous HL_5J7L_010 HL_37824.8 | |
HL_7TOS_011 | 1/16S/419:424 | UNCG | homologous HL_5J7L_011 HL_34617.5 | |
HL_7TOS_012 | 1/16S/462:470 | GNRA wlth extra near cWW | homologous HL_5J7L_012 HL_81538.2 | |
HL_7TOS_013 | 1/16S/522:527 | No text annotation | geometric HL_5J7L_143 HL_75660.5 | |
HL_7TOS_014 | 1/16S/617:623 | GNRA-like with tWH | homologous HL_5J7L_014 HL_10453.3 | |
HL_7TOS_015 | 1/16S/689:698 | No text annotation | homologous HL_5J7L_015 HL_75293.5 | |
HL_7TOS_016 | 1/16S/726:731 | GNRA | homologous HL_5J7L_016 HL_37824.8 | |
HL_7TOS_017 | 1/16S/786:796 | No text annotation | homologous HL_5J7L_017 HL_75293.5 | |
HL_7TOS_018 | 1/16S/840:846 | Externally structured | geometric HL_8C3A_022 NA | |
HL_7TOS_019 | 1/16S/862:867 | GNRA | homologous HL_5J7L_019 HL_37824.8 | |
HL_7TOS_020 | 1/16S/897:902 | GNRA | homologous HL_4LFB_020 HL_37824.8 | |
HL_7TOS_021 | 1/16S/963:972 | No text annotation | homologous HL_5J7L_021 HL_50779.4 | |
HL_7TOS_022 | 1/16S/1012:1017 | GNRA | homologous HL_4LFB_022 HL_37824.8 | |
HL_7TOS_023 | 1/16S/1028:1033 | No text annotation | geometric HL_4V88_198 NA | |
HL_7TOS_024 | 1/16S/1076:1081 | GNRA | homologous HL_5J7L_023 HL_37824.8 | |
HL_7TOS_025 | 1/16S/1089:1096 | T-loop related | homologous HL_4LFB_025 HL_77436.5 | |
HL_7TOS_026 | 1/16S/1134:1140 | No text annotation | homologous HL_6CZR_097 NA | |
HL_7TOS_027 | 1/16S/1165:1171 | GNRA | homologous HL_4LFB_027 HL_37824.8 | |
HL_7TOS_028 | 1/16S/1265:1270 | GNRA | homologous HL_5J7L_027 HL_37824.8 | |
HL_7TOS_029 | 1/16S/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_5J7L_028 HL_02887.3 | |
HL_7TOS_030 | 1/16S/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_06226.4 | |
HL_7TOS_031 | 1/16S/1449:1454 | UNCG | homologous HL_5J7L_030 HL_34617.5 | |
HL_7TOS_032 | 1/16S/1515:1520 | GNRA | homologous HL_4LFB_032 HL_37824.8 | |
HL_7TOS_033 | 1/23S/59:68 | Pseudoknot geometry | geometric HL_4GXY_003 HL_65794.5 | |
HL_7TOS_034 | 1/23S/87:95 | No text annotation | geometric HL_5J7L_135 HL_80241.1 | |
HL_7TOS_035 | 1/23S/123:128 | No text annotation | geometric HL_4WF9_003 HL_75660.5 | |
HL_7TOS_036 | 1/23S/137:142 | No text annotation | geometric HL_2Y8W_001 HL_81100.2 | |
HL_7TOS_037 | 1/23S/158:168 | No text annotation | geometric HL_5J7L_138 HL_68257.1 | |
HL_7TOS_038 | 1/23S/194:201 | No text annotation | geometric HL_4WF9_006 HL_30068.2 | |
HL_7TOS_039 | 1/23S/225:230 | No text annotation | geometric HL_5J7L_140 HL_62934.1 | |
HL_7TOS_040 | 1/23S/246:252 | No text annotation | geometric HL_5J7L_141 HL_37369.2 | |
HL_7TOS_041 | 1/23S/305:312 | T-loop with 2 stacked bulged bases | geometric HL_5J7L_142 HL_01609.3 | |
HL_7TOS_042 | 1/23S/327:335 | T-loop with unstacked turn | geometric HL_5J7L_144 HL_27670.2 | |
HL_7TOS_043 | 1/23S/382:392 | No text annotation | geometric HL_5J7L_145 HL_91503.7 | |
HL_7TOS_044 | 1/23S/410:417 | Pseudoknot geometry | geometric HL_7A0S_014 HL_30680.3 | |
HL_7TOS_045 | 1/23S/462:467 | GNRA | geometric HL_7RQB_063 NA | |
HL_7TOS_046 | 1/23S/487:493 | GNRA | geometric HL_5J7L_148 HL_37824.8 | |
HL_7TOS_107 | 1/23S/545:548 | Mini UNCG with extended bulge | homologous HL_7A0S_017 HL_48778.2 | |
HL_7TOS_048 | 1/23S/566:575 | T-loop with 2 stacked bulged bases | geometric HL_5J7L_150 HL_28252.9 | |
HL_7TOS_049 | 1/23S/611:617 | No text annotation | geometric HL_361D_002 HL_13963.3 | |
HL_7TOS_050 | 1/23S/629:634 | GNRA | geometric HL_5J7L_152 HL_37824.8 | |
HL_7TOS_051 | 1/23S/641:647 | No text annotation | geometric HL_5J7L_153 HL_13529.1 | |
HL_7TOS_052 | 1/23S/712:719 | GNRA wlth tandem sheared | geometric HL_5J7L_154 HL_81538.2 | |
HL_7TOS_053 | 1/23S/744:753 | No text annotation | geometric HL_4WF9_023 HL_88205.2 | |
HL_7TOS_054 | 1/23S/779:785 | No text annotation | geometric HL_5U3G_001 HL_75660.5 | |
HL_7TOS_055 | 1/23S/826:831 | No text annotation | geometric HL_7RQB_025 NA | |
HL_7TOS_103 | 1/23S/885:891 | No text annotation | geometric HL_8KAL_003 HL_75660.5 | |
HL_7TOS_057 | 1/23S/955:962 | GNRA | geometric HL_4WF9_027 HL_37824.8 | |
HL_7TOS_058 | 1/23S/978:985 | No text annotation | geometric HL_5TBW_006 NA | |
HL_7TOS_059 | 1/23S/1064:1074 | No text annotation | ||
HL_7TOS_060 | 1/23S/1092:1099 | GNRA wlth tandem sheared | geometric HL_6PRV_002 HL_81538.2 | |
HL_7TOS_061 | 1/23S/1171:1178 | No text annotation | ||
HL_7TOS_062 | 1/23S/1222:1227 | No text annotation | geometric HL_5NFV_001 HL_69752.2 | |
HL_7TOS_063 | 1/23S/1281:1289 | T-loop with 2 stacked bulged bases | geometric HL_5TBW_031 NA | |
HL_7TOS_064 | 1/23S/1324:1330 | Pseudoknot geometry with 3' bulge | geometric HL_5J7L_166 HL_57176.2 | |
HL_7TOS_065 | 1/23S/1363:1368 | GNRA | geometric HL_5J7L_167 HL_37824.8 | |
HL_7TOS_066 | 1/23S/1389:1398 | No text annotation | geometric HL_5J7L_168 HL_81545.2 | |
HL_7TOS_067 | 1/23S/1451:1459 | Mini UNCG | geometric HL_4L8H_001 HL_48778.2 | |
HL_7TOS_068 | 1/23S/1492:1498 | Pseudoknot geometry with 3' bulge | geometric HL_5J7L_170 HL_57176.2 | |
HL_7TOS_069 | 1/23S/1533:1538 | No text annotation | geometric HL_8C3A_196 NA | |
HL_7TOS_070 | 1/23S/1565:1568 | Mini UNCG | geometric HL_5F9R_002 HL_48778.2 | |
HL_7TOS_071 | 1/23S/1612:1619 | No text annotation | geometric HL_7RQB_040 NA | |
HL_7TOS_072 | 1/23S/1630:1636 | GNRA | geometric HL_5J7L_174 HL_37824.8 | |
HL_7TOS_073 | 1/23S/1691:1696 | UNCG | geometric HL_4PMI_004 HL_34617.5 | |
HL_7TOS_104 | 1/23S/1727:1733 | No text annotation | homologous HL_5J7L_214 HL_08100.1 | |
HL_7TOS_074 | 1/23S/1728:1731 | No text annotation | geometric HL_5J7L_176 HL_32346.4 | |
HL_7TOS_075 | 1/23S/1752:1756 | No text annotation | geometric HL_5J7L_177 HL_80709.3 | |
HL_7TOS_076 | 1/23S/1777:1787 | No text annotation | geometric HL_4WF9_043 HL_01962.2 | |
HL_7TOS_077 | 1/23S/1806:1811 | GNRA related | geometric HL_5J7L_179 HL_04783.2 | |
HL_7TOS_078 | 1/23S/1868:1873 | UNCG variation | geometric HL_2CZJ_007 NA | |
HL_7TOS_079 | 1/23S/1910:1920 | No text annotation | geometric HL_5TBW_049 NA | |
HL_7TOS_080 | 1/23S/1949:1957 | No text annotation | geometric HL_5J7L_182 HL_20167.2 | |
HL_7TOS_081 | 1/23S/2027:2036 | No text annotation | geometric HL_4WF9_047 HL_61996.3 | |
HL_7TOS_108 | 1/23S/2142:2149 | No text annotation | ||
HL_7TOS_083 | 1/23S/2209:2215 | No text annotation | geometric HL_5J7L_185 HL_49922.4 | |
HL_7TOS_084 | 1/23S/2248:2256 | No text annotation | geometric HL_7A0S_052 HL_85367.2 | |
HL_7TOS_085 | 1/23S/2264:2276 | No text annotation | geometric HL_5J7L_187 HL_91939.2 | |
HL_7TOS_109 | 1/23S/2304:2312 | No text annotation | homologous HL_5J7L_219 HL_50860.2 | |
HL_7TOS_087 | 1/23S/2324:2331 | Pseudoknot geometry | geometric HL_5J7L_189 HL_93324.4 | |
HL_7TOS_088 | 1/23S/2356:2361 | GNRA | geometric HL_5J7L_190 HL_37824.8 | |
HL_7TOS_089 | 1/23S/2374:2379 | GNRA | geometric HL_7RQB_020 NA | |
HL_7TOS_090 | 1/23S/2404:2413 | No text annotation | geometric HL_7A0S_058 HL_53454.2 | |
HL_7TOS_091 | 1/23S/2471:2479 | No text annotation | geometric HL_4WF9_056 HL_32735.2 | |
HL_7TOS_092 | 1/23S/2528:2535 | GNRA variation | geometric HL_5J7L_194 HL_31585.4 | |
HL_7TOS_093 | 1/23S/2551:2557 | No text annotation | geometric HL_4WF9_058 HL_30068.2 | |
HL_7TOS_094 | 1/23S/2594:2599 | GNRA | geometric HL_7RQB_063 NA | |
HL_7TOS_095 | 1/23S/2658:2663 | GNRA | geometric HL_5J7L_197 HL_37824.8 | |
HL_7TOS_096 | 1/23S/2701:2706 | Ribsomal LSU H95 | geometric HL_5J7L_198 HL_65794.5 | |
HL_7TOS_097 | 1/23S/2745:2759 | No text annotation | geometric HL_5J7L_199 HL_74055.2 | |
HL_7TOS_098 | 1/23S/2795:2801 | UNCG variation | geometric HL_7A0S_023 HL_53890.2 | |
HL_7TOS_099 | 1/23S/2819:2827 | No text annotation | geometric HL_5J7L_201 HL_64690.6 | |
HL_7TOS_100 | 1/23S/2856:2861 | GNRA | geometric HL_7A0S_068 HL_37824.8 | |
HL_7TOS_106 | 1/5S/34:48 | No text annotation | homologous HL_5J7L_215 HL_97756.2 | |
HL_7TOS_101 | 1/5S/38:44 | No text annotation | homologous HL_5J7L_203 HL_47787.2 | |
HL_7TOS_102 | 1/5S/86:90 | Mini UNCG | homologous HL_5J7L_204 HL_48778.2 |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
HL_7TOS_047 | No text annotation | ||
HL_7TOS_056 | GNRA with extra near cWW | ||
HL_7TOS_105 | No text annotation | ||
HL_7TOS_082 | No text annotation | ||
HL_7TOS_086 | No text annotation |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
IL_7TOS_001 | 1/16S/30:32, 1/16S/552:553 | Single bulged G | homologous IL_5J7L_001 IL_00225.14 | |
IL_7TOS_002 | 1/16S/44:45, 1/16S/396:398 | Single bulged A | homologous IL_5J7L_002 IL_31462.7 | |
IL_7TOS_003 | 1/16S/47:52, 1/16S/359:361 | No text annotation | geometric IL_5J7L_003 IL_14177.2 | |
IL_7TOS_004 | 1/16S/54:56, 1/16S/356:357 | Minor groove platform | homologous IL_4LFB_004 IL_51454.3 | |
IL_7TOS_005 | 1/16S/63:66, 1/16S/103:104 | Multiple bulged bases | homologous IL_5J7L_005 IL_82107.5 | |
IL_7TOS_006 | 1/16S/67:69, 1/16S/99:102 | Minor groove platform with extra cWW | homologous IL_5J7L_006 IL_90351.1 | |
IL_7TOS_007 | 1/16S/70:73, 1/16S/97:98 | Minor groove platform | homologous IL_5J7L_007 IL_15052.4 | |
IL_7TOS_008 | 1/16S/75:76, 1/16S/93:95 | Single bulged G | geometric IL_5DEA_002 IL_00225.14 | |
IL_7TOS_009 | 1/16S/128:131, 1/16S/231:233 | Isolated non-canonical cWW pair | homologous IL_5J7L_009 IL_57744.1 | |
IL_7TOS_010 | 1/16S/132:136, 1/16S/227:230 | Minor groove platform related | homologous IL_5J7L_010 IL_64231.5 | |
IL_7TOS_011 | 1/16S/144:146, 1/16S/176:178 | Isolated cWH basepair | homologous IL_5J7L_011 IL_10167.6 | |
IL_7TOS_012 | 1/16S/147:153, 1/16S/168:175 | tWH-tWH-tHW-tHW | homologous IL_5J7L_012 IL_80604.6 | |
IL_7TOS_013 | 1/16S/203:206, 1/16S/213:214 | Minor groove platform | geometric IL_3IWN_005 IL_15052.4 | |
IL_7TOS_014 | 1/16S/242:247, 1/16S/277:284 | Kink-turn with non-sequential stacking | geometric IL_4V88_402 NA | |
IL_7TOS_015 | 1/16S/249:252, 1/16S/274:275 | No text annotation | homologous IL_4LFB_012 IL_47074.2 | |
IL_7TOS_016 | 1/16S/292:293, 1/16S/304:308 | C-loop | homologous IL_4LFB_013 IL_03109.3 | |
IL_7TOS_017 | 1/16S/367:369, 1/16S/392:393 | Single bulged U | geometric IL_5J7L_017 IL_89505.4 | |
IL_7TOS_018 | 1/16S/371:375, 1/16S/389:390 | C-loop | geometric IL_5J7L_018 IL_03109.3 | |
IL_7TOS_019 | 1/16S/375:376, 1/16S/387:389 | Single bulged G | homologous IL_5J7L_019 IL_00225.14 | |
IL_7TOS_020 | 1/16S/409:416, 1/16S/427:433 | No text annotation | homologous IL_5J7L_020 IL_28026.3 | |
IL_7TOS_021 | 1/16S/440:442, 1/16S/492:497 | No text annotation | homologous IL_5J7L_021 IL_33323.1 | |
IL_7TOS_022 | 1/16S/446:450, 1/16S/483:488 | tSH-tHW-tWW | homologous IL_5J7L_022 IL_88269.4 | |
IL_7TOS_023 | 1/16S/450:455, 1/16S/477:483 | No text annotation | geometric IL_5J7L_023 IL_70801.1 | |
IL_7TOS_024 | 1/16S/504:511, 1/16S/540:541 | SSU/LSU pseudoknot | homologous IL_4LFB_020 IL_41203.4 | |
IL_7TOS_025 | 1/16S/515:521, 1/16S/528:536 | Kink-turn related | geometric IL_4V88_415 NA | |
IL_7TOS_026 | 1/16S/569:575, 1/16S/880:881 | No text annotation | homologous IL_5J7L_026 IL_38186.6 | |
IL_7TOS_027 | 1/16S/580:584, 1/16S/757:761 | tSH-tHW-tHS | homologous IL_5J7L_027 IL_17136.7 | |
IL_7TOS_028 | 1/16S/594:596, 1/16S/644:645 | Major groove platform | homologous IL_5J7L_028 IL_48076.6 | |
IL_7TOS_029 | 1/16S/597:598, 1/16S/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_029 IL_68140.4 | |
IL_7TOS_030 | 1/16S/605:612, 1/16S/628:633 | No text annotation | homologous IL_5J7L_030 IL_78349.3 | |
IL_7TOS_031 | 1/16S/654:655, 1/16S/751:754 | Major groove platform; stack outside cWW | homologous IL_4LFB_027 IL_50694.7 | |
IL_7TOS_032 | 1/16S/659:660, 1/16S/745:747 | Single stack bend | homologous IL_5J7L_032 IL_26793.1 | |
IL_7TOS_033 | 1/16S/662:666, 1/16S/740:743 | Tandem non-canonical cWW pairs | homologous IL_5J7L_033 IL_85033.2 | |
IL_7TOS_179 | 1/16S/673:677, 1/16S/713:717 | Triple non-canonical cWW pairs | homologous IL_4LFB_065 IL_49751.4 | |
IL_7TOS_035 | 1/16S/684:688, 1/16S/699:706 | Kink-turn | homologous IL_5J7L_035 IL_01488.3 | |
IL_7TOS_036 | 1/16S/774:778, 1/16S/804:805 | Left turn | homologous IL_4LFB_032 IL_29346.2 | |
IL_7TOS_037 | 1/16S/779:783, 1/16S/799:803 | tSH-tHW-tHS | homologous IL_5J7L_037 IL_17136.7 | |
IL_7TOS_038 | 1/16S/887:894, 1/16S/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_5J7L_038 IL_41756.4 | |
IL_7TOS_039 | 1/16S/922:923, 1/16S/1393:1395 | Single bulged A | homologous IL_5J7L_039 IL_31462.7 | |
IL_7TOS_040 | 1/16S/925:927, 1/16S/1390:1391 | Single bulged G | homologous IL_4LFB_036 IL_00225.14 | |
IL_7TOS_041 | 1/16S/933:935, 1/16S/1380:1384 | Minor groove platform | homologous IL_5J7L_041 IL_47078.3 | |
IL_7TOS_042 | 1/16S/953:954, 1/16S/1226:1228 | No text annotation | homologous IL_6CZR_150 NA | |
IL_7TOS_043 | 1/16S/993:997, 1/16S/1044:1045 | Minor groove platform | homologous IL_5J7L_043 IL_47078.3 | |
IL_7TOS_044 | 1/16S/998:999, 1/16S/1041:1043 | Single stack bend | homologous IL_5J7L_044 IL_26793.1 | |
IL_7TOS_180 | 1/16S/1003:1006, 1/16S/1023:1037 | No text annotation | ||
IL_7TOS_045 | 1/16S/1048:1050, 1/16S/1208:1209 | Single bulged U | homologous IL_5J7L_046 IL_89505.4 | |
IL_7TOS_181 | 1/16S/1052:1056, 1/16S/1204:1206 | No text annotation | homologous IL_6CZR_154 NA | |
IL_7TOS_047 | 1/16S/1057:1058, 1/16S/1199:1203 | Minor groove platform | homologous IL_4LFB_045 IL_95583.2 | |
IL_7TOS_048 | 1/16S/1060:1061, 1/16S/1195:1197 | Single bulged A | homologous IL_5J7L_049 IL_31462.7 | |
IL_7TOS_049 | 1/16S/1061:1063, 1/16S/1193:1195 | Isolated non-canonical cWW pair | geometric IL_5J7L_050 IL_28037.2 | |
IL_7TOS_050 | 1/16S/1124:1128, 1/16S/1144:1149 | No text annotation | homologous IL_5J7L_051 IL_06691.1 | |
IL_7TOS_051 | 1/16S/1129:1132, 1/16S/1142:1143 | Minor groove platform | homologous IL_5J7L_052 IL_15052.4 | |
IL_7TOS_052 | 1/16S/1158:1161, 1/16S/1175:1181 | No text annotation | homologous IL_5J7L_053 IL_42032.1 | |
IL_7TOS_053 | 1/16S/1247:1253, 1/16S/1284:1290 | No text annotation | homologous IL_5J7L_054 IL_09129.2 | |
IL_7TOS_054 | 1/16S/1255:1258, 1/16S/1277:1282 | 180 degree turn | homologous IL_5J7L_055 IL_11344.2 | |
IL_7TOS_055 | 1/16S/1259:1263, 1/16S/1272:1276 | Double sheared with non-canonical cWW | geometric IL_5J7L_274 IL_17948.2 | |
IL_7TOS_056 | 1/16S/1303:1308, 1/16S/1329:1334 | No text annotation | homologous IL_4LFB_055 IL_85536.2 | |
IL_7TOS_057 | 1/16S/1399:1401, 1/16S/1501:1504 | No text annotation | geometric IL_5J7L_058 IL_61438.4 | |
IL_7TOS_058 | 1/16S/1401:1404, 1/16S/1497:1501 | No text annotation | geometric IL_4V88_464 NA | |
IL_7TOS_059 | 1/16S/1405:1407, 1/16S/1494:1496 | Isolated non-canonical cWW pair | geometric IL_5VCI_002 IL_87907.2 | |
IL_7TOS_060 | 1/16S/1407:1409, 1/16S/1491:1494 | Isolated non-canonical cWW pair | homologous IL_5J7L_363 IL_87907.2 | |
IL_7TOS_182 | 1/16S/1412:1414, 1/16S/1486:1488 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 IL_87907.2 | |
IL_7TOS_062 | 1/16S/1416:1419, 1/16S/1481:1484 | Double sheared | homologous IL_6CZR_169 NA | |
IL_7TOS_063 | 1/16S/1430:1435, 1/16S/1466:1470 | Triple sheared related | homologous IL_5J7L_063 IL_80231.1 | |
IL_7TOS_064 | 1/16S/1440:1442, 1/16S/1460:1461 | Single bulged A | homologous IL_5J7L_064 IL_31462.7 | |
IL_7TOS_065 | 1/16S/1445:1448, 1/16S/1455:1457 | No text annotation | homologous IL_5J7L_065 IL_31531.3 | |
IL_7TOS_066 | 1/23S/24:30, 1/23S/510:516 | Triple sheared with non-canonical cWW | geometric IL_7A0S_001 IL_04021.2 | |
IL_7TOS_067 | 1/23S/36:37, 1/23S/442:444 | Single bulged A | geometric IL_5J7L_246 IL_31462.7 | |
IL_7TOS_068 | 1/23S/43:44, 1/23S/434:436 | Minor groove platform | geometric IL_5J7L_247 IL_51454.3 | |
IL_7TOS_069 | 1/23S/81:85, 1/23S/97:105 | No text annotation | geometric IL_5J7L_248 IL_37015.1 | |
IL_7TOS_070 | 1/23S/183:184, 1/23S/212:214 | Single stack bend | geometric IL_7A0S_005 IL_90729.1 | |
IL_7TOS_071 | 1/23S/188:194, 1/23S/201:208 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_7A0S_006 IL_04346.10 | |
IL_7TOS_072 | 1/23S/239:245, 1/23S/253:258 | 7x6 Sarcin-Ricin; G-bulge | geometric IL_5J7L_251 IL_26307.2 | |
IL_7TOS_073 | 1/23S/269:271, 1/23S/366:370 | No text annotation | geometric IL_5J7L_252 IL_47972.1 | |
IL_7TOS_074 | 1/23S/274:281, 1/23S/359:363 | No text annotation | geometric IL_5J7L_253 IL_77870.1 | |
IL_7TOS_075 | 1/23S/293:295, 1/23S/343:347 | No text annotation | geometric IL_5J7L_254 IL_69440.3 | |
IL_7TOS_076 | 1/23S/481:484, 1/23S/496:509 | No text annotation | geometric IL_5J7L_255 IL_81516.2 | |
IL_7TOS_077 | 1/23S/536:539, 1/23S/554:557 | Double sheared | geometric IL_5J7L_256 IL_09705.15 | |
IL_7TOS_078 | 1/23S/564:566, 1/23S/575:577 | Isolated non-canonical cWW pair | geometric IL_4WF9_017 IL_07785.1 | |
IL_7TOS_079 | 1/23S/606:610, 1/23S/618:622 | AAA cross-strand stack | geometric IL_5J7L_258 IL_66798.2 | |
IL_7TOS_080 | 1/23S/672:674, 1/23S/806:808 | Isolated non-canonical cWW pair | geometric IL_4LFB_010 IL_87907.2 | |
IL_7TOS_081 | 1/23S/674:678, 1/23S/799:806 | tHW-tHW cross-strand stack | geometric IL_7RQB_018 NA | |
IL_7TOS_082 | 1/23S/697:698, 1/23S/763:765 | Single bulged A | geometric IL_4V9F_025 IL_31462.7 | |
IL_7TOS_083 | 1/23S/702:703, 1/23S/728:730 | Single bulged G | geometric IL_7RQB_020 NA | |
IL_7TOS_084 | 1/23S/703:707, 1/23S/724:728 | Triple sheared | geometric IL_7RQB_021 NA | |
IL_7TOS_085 | 1/23S/738:740, 1/23S/757:758 | Major groove platform | geometric IL_5J7L_264 IL_48076.6 | |
IL_7TOS_086 | 1/23S/775:777, 1/23S/787:791 | Multiple bulged bases | geometric IL_5J7L_265 IL_06549.2 | |
IL_7TOS_087 | 1/23S/844:847, 1/23S/933:934 | 90 degree turn | geometric IL_5J7L_267 IL_90729.1 | |
IL_7TOS_183 | 1/23S/844:848, 1/23S/930:934 | No text annotation | homologous IL_5J7L_399 IL_96236.1 | |
IL_7TOS_088 | 1/23S/847:848, 1/23S/930:933 | Stack outside cWW | geometric IL_5J7L_268 IL_56987.1 | |
IL_7TOS_089 | 1/23S/850:851, 1/23S/926:928 | Single stack bend | geometric IL_5J7L_269 IL_26793.1 | |
IL_7TOS_090 | 1/23S/856:862, 1/23S/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_5J7L_270 IL_29198.2 | |
IL_7TOS_091 | 1/23S/862:863, 1/23S/913:915 | Single bulged G | geometric IL_5J7L_271 IL_00225.14 | |
IL_7TOS_092 | 1/23S/864:868, 1/23S/909:912 | C-loop with bulged stacked A's | geometric IL_5J7L_272 IL_26222.2 | |
IL_7TOS_093 | 1/23S/870:872, 1/23S/905:907 | Isolated non-canonical cWW pair | geometric IL_5J7L_273 IL_28037.2 | |
IL_7TOS_094 | 1/23S/875:879, 1/23S/898:902 | Double sheared with non-canonical cWW | geometric IL_5J7L_338 IL_17948.2 | |
IL_7TOS_184 | 1/23S/880:881, 1/23S/895:897 | No text annotation | ||
IL_7TOS_096 | 1/23S/994:996, 1/23S/1159:1160 | Single bulged C | geometric IL_7RQB_035 NA | |
IL_7TOS_097 | 1/23S/998:1002, 1/23S/1153:1157 | UAA/GAN | geometric IL_4WF9_036 IL_38507.2 | |
IL_7TOS_098 | 1/23S/1004:1011, 1/23S/1150:1151 | SSU/LSU pseudoknot | geometric IL_5J7L_278 IL_41203.4 | |
IL_7TOS_099 | 1/23S/1011:1013, 1/23S/1149:1150 | Single bulged U | geometric IL_5J7L_279 IL_89505.4 | |
IL_7TOS_100 | 1/23S/1018:1024, 1/23S/1140:1144 | Kink-turn related | geometric IL_4WF9_039 IL_57188.5 | |
IL_7TOS_101 | 1/23S/1024:1030, 1/23S/1124:1140 | No text annotation | geometric IL_5J7L_281 IL_50715.3 | |
IL_7TOS_102 | 1/23S/1031:1034, 1/23S/1121:1123 | Isolated non-canonical cWW pair | geometric IL_7RQB_041 NA | |
IL_7TOS_103 | 1/23S/1038:1041, 1/23S/1114:1117 | Tandem non-canonical cWW pairs | geometric IL_5J7L_283 IL_85033.2 | |
IL_7TOS_104 | 1/23S/1043:1051, 1/23S/1108:1112 | Kink-turn | geometric IL_5TBW_054 NA | |
IL_7TOS_105 | 1/23S/1059:1062, 1/23S/1076:1079 | No text annotation | homologous IL_5J7L_285 IL_92446.2 | |
IL_7TOS_106 | 1/23S/1087:1090, 1/23S/1101:1102 | Major groove platform | geometric IL_4LFB_024 IL_48076.6 | |
IL_7TOS_107 | 1/23S/1196:1198, 1/23S/1247:1250 | Isolated cWS basepair | geometric IL_7A0S_041 IL_42997.3 | |
IL_7TOS_108 | 1/23S/1202:1206, 1/23S/1240:1243 | No text annotation | geometric IL_5J7L_287 IL_91920.1 | |
IL_7TOS_109 | 1/23S/1208:1215, 1/23S/1234:1238 | Kink-turn | geometric IL_5J7L_288 IL_70923.9 | |
IL_7TOS_110 | 1/23S/1262:1269, 1/23S/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5J7L_289 IL_04346.10 | |
IL_7TOS_111 | 1/23S/1310:1313, 1/23S/1603:1604 | Major groove platform; stack outside cWW | geometric IL_7RQB_050 NA | |
IL_7TOS_112 | 1/23S/1319:1323, 1/23S/1331:1333 | Major groove minor groove platform with tHH | geometric IL_4WF9_050 IL_83150.2 | |
IL_7TOS_113 | 1/23S/1351:1355, 1/23S/1376:1380 | UAA/GAN | geometric IL_5J7L_292 IL_89021.2 | |
IL_7TOS_114 | 1/23S/1357:1361, 1/23S/1370:1374 | tSH-tHW-tHS | geometric IL_5J7L_293 IL_17136.7 | |
IL_7TOS_115 | 1/23S/1415:1416, 1/23S/1582:1587 | No text annotation | geometric IL_5J7L_294 IL_87211.1 | |
IL_7TOS_116 | 1/23S/1417:1421, 1/23S/1577:1581 | UAA/GAN | geometric IL_5J7L_295 IL_38507.2 | |
IL_7TOS_117 | 1/23S/1432:1435, 1/23S/1557:1561 | Tandem non-canonical cWW pairs | geometric IL_5J7L_296 IL_58112.2 | |
IL_7TOS_118 | 1/23S/1437:1440, 1/23S/1551:1555 | tSH-tHW | geometric IL_5J7L_297 IL_99646.2 | |
IL_7TOS_119 | 1/23S/1450:1451, 1/23S/1459:1461 | Single bulged U | geometric IL_5J7L_298 IL_89505.4 | |
IL_7TOS_120 | 1/23S/1468:1471, 1/23S/1520:1524 | No text annotation | geometric IL_5J7L_299 IL_68574.4 | |
IL_7TOS_121 | 1/23S/1474:1478, 1/23S/1513:1517 | tSH-tHW-tHS | geometric IL_5J7L_300 IL_38862.4 | |
IL_7TOS_122 | 1/23S/1481:1482, 1/23S/1507:1510 | 180 degree turn | geometric IL_5J7L_301 IL_00881.1 | |
IL_7TOS_123 | 1/23S/1489:1491, 1/23S/1499:1500 | Single bulged A | geometric IL_4V9F_098 IL_31462.7 | |
IL_7TOS_124 | 1/23S/1526:1529, 1/23S/1542:1546 | UAA/GAN variation | geometric IL_5J7L_303 IL_23774.1 | |
IL_7TOS_125 | 1/23S/1651:1656, 1/23S/2004:2006 | No text annotation | geometric IL_5J7L_304 IL_12566.4 | |
IL_7TOS_126 | 1/23S/1663:1665, 1/23S/1995:1997 | Isolated tWW turn | geometric IL_5J7L_305 IL_67095.2 | |
IL_7TOS_127 | 1/23S/1666:1669, 1/23S/1993:1994 | Major groove platform; stack outside cWW | geometric IL_7RQB_066 NA | |
IL_7TOS_186 | 1/23S/1666:1674, 1/23S/1990:1994 | No text annotation | homologous IL_4WF9_117 IL_22854.4 | |
IL_7TOS_128 | 1/23S/1669:1674, 1/23S/1990:1993 | Intercalated tWH | geometric IL_4WF9_065 IL_76758.2 | |
IL_7TOS_129 | 1/23S/1686:1691, 1/23S/1696:1702 | tSH-tSH-tHH-tHS | geometric IL_5J7L_308 IL_47346.2 | |
IL_7TOS_130 | 1/23S/1712:1718, 1/23S/1742:1746 | 6x5 Sarcin-Ricin; G-bulge | geometric IL_5J7L_309 IL_88269.4 | |
IL_7TOS_131 | 1/23S/1720:1724, 1/23S/1736:1740 | Triple sheared | geometric IL_5J7L_310 IL_50730.2 | |
IL_7TOS_132 | 1/23S/1727:1728, 1/23S/1731:1733 | Single bulged C | geometric IL_5J7L_311 IL_61258.15 | |
IL_7TOS_133 | 1/23S/1770:1771, 1/23S/1980:1982 | Single bulged A | geometric IL_5J7L_312 IL_31462.7 | |
IL_7TOS_134 | 1/23S/1798:1804, 1/23S/1813:1821 | Kink-turn related | geometric IL_5J7L_313 IL_17069.5 | |
IL_7TOS_135 | 1/23S/1837:1840, 1/23S/1902:1903 | Minor groove platform, major groove intercalation | geometric IL_1U9S_005 IL_95583.2 | |
IL_7TOS_136 | 1/23S/1841:1842, 1/23S/1898:1901 | Major groove intercalation | geometric IL_5J7L_315 IL_82107.5 | |
IL_7TOS_137 | 1/23S/1846:1849, 1/23S/1893:1894 | Major groove minor groove platform; mini C-loop | geometric IL_5J7L_316 IL_68140.4 | |
IL_7TOS_187 | 1/23S/1851:1860, 1/23S/1882:1891 | No text annotation | homologous IL_5J7L_387 IL_61249.1 | |
IL_7TOS_138 | 1/23S/1864:1867, 1/23S/1874:1878 | UAA/GAN related | geometric IL_5J7L_317 IL_77691.5 | |
IL_7TOS_139 | 1/23S/1933:1934, 1/23S/1964:1967 | Bulged stacked bases | geometric IL_7A0S_071 IL_22551.4 | |
IL_7TOS_140 | 1/23S/1934:1945, 1/23S/1961:1964 | No text annotation | geometric IL_7A0S_072 IL_04332.3 | |
IL_7TOS_141 | 1/23S/2050:2052, 1/23S/2617:2618 | Major groove platform | geometric IL_4LFB_024 IL_48076.6 | |
IL_7TOS_142 | 1/23S/2054:2056, 1/23S/2612:2615 | No text annotation | geometric IL_5J7L_321 IL_83389.2 | |
IL_7TOS_143 | 1/23S/2067:2069, 1/23S/2442:2443 | Single bulged U | geometric IL_4WF9_080 IL_89505.4 | |
IL_7TOS_144 | 1/23S/2070:2071, 1/23S/2438:2441 | Minor groove platform | geometric IL_7RQB_081 NA | |
IL_7TOS_145 | 1/23S/2081:2083, 1/23S/2236:2239 | Isolated tHS basepair with bulges | geometric IL_5J7L_325 IL_85599.2 | |
IL_7TOS_146 | 1/23S/2085:2087, 1/23S/2232:2234 | Isolated non-canonical cWW pair | geometric IL_5J7L_326 IL_28037.2 | |
IL_7TOS_147 | 1/23S/2103:2105, 1/23S/2184:2186 | Isolated non-canonical cWW pair | geometric IL_4E48_003 IL_87907.2 | |
IL_7TOS_148 | 1/23S/2106:2121, 1/23S/2177:2183 | No text annotation | ||
IL_7TOS_188 | 1/23S/2106:2124, 1/23S/2174:2183 | No text annotation | ||
IL_7TOS_189 | 1/23S/2124:2127, 1/23S/2161:2174 | No text annotation | ||
IL_7TOS_150 | 1/23S/2128:2137, 1/23S/2154:2160 | No text annotation | ||
IL_7TOS_151 | 1/23S/2202:2204, 1/23S/2220:2221 | Single bulged U | geometric IL_5J7L_331 IL_89505.4 | |
IL_7TOS_152 | 1/23S/2350:2353, 1/23S/2364:2367 | Double sheared | geometric IL_7RQB_089 NA | |
IL_7TOS_153 | 1/23S/2401:2403, 1/23S/2414:2415 | No text annotation | ||
IL_7TOS_154 | 1/23S/2453:2454, 1/23S/2498:2500 | Single stack bend | geometric IL_4WF9_089 IL_26793.1 | |
IL_7TOS_155 | 1/23S/2454:2455, 1/23S/2496:2498 | Major groove platform | geometric IL_5T5A_002 IL_48076.6 | |
IL_7TOS_156 | 1/23S/2457:2459, 1/23S/2493:2494 | Major groove platform | geometric IL_7A0S_085 IL_48076.6 | |
IL_7TOS_157 | 1/23S/2459:2461, 1/23S/2489:2493 | Major groove minor groove platform with extra cWW | geometric IL_4V9F_084 IL_51387.3 | |
IL_7TOS_158 | 1/23S/2466:2470, 1/23S/2480:2484 | Double sheared with non-canonical cWW | geometric IL_5J7L_338 IL_17948.2 | |
IL_7TOS_159 | 1/23S/2507:2508, 1/23S/2580:2582 | Major groove platform | geometric IL_4V9F_086 IL_07039.3 | |
IL_7TOS_160 | 1/23S/2510:2512, 1/23S/2574:2578 | Isolated non-canonical cWW with bulges | geometric IL_5J7L_340 IL_07785.1 | |
IL_7TOS_161 | 1/23S/2512:2513, 1/23S/2571:2574 | No text annotation | geometric IL_5J7L_341 IL_42626.2 | |
IL_7TOS_162 | 1/23S/2522:2523, 1/23S/2540:2543 | Major groove platform with intercalation | geometric IL_5J7L_342 IL_02555.1 | |
IL_7TOS_163 | 1/23S/2591:2592, 1/23S/2601:2603 | Single bulged A | geometric IL_1U9S_001 IL_31462.7 | |
IL_7TOS_164 | 1/23S/2636:2640, 1/23S/2774:2782 | tSH-tHS-tHW | geometric IL_5J7L_345 IL_04638.3 | |
IL_7TOS_165 | 1/23S/2652:2658, 1/23S/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_5J7L_346 IL_16458.4 | |
IL_7TOS_166 | 1/23S/2680:2684, 1/23S/2725:2727 | C-loop | geometric IL_1KOG_007 IL_63596.11 | |
IL_7TOS_167 | 1/23S/2687:2691, 1/23S/2718:2722 | UAA/GAN related, with intercalation | geometric IL_5J7L_348 IL_23774.1 | |
IL_7TOS_168 | 1/23S/2695:2696, 1/23S/2711:2714 | Multiple bulged bases | geometric IL_5J7L_349 IL_42626.2 | |
IL_7TOS_169 | 1/23S/2737:2742, 1/23S/2762:2767 | UAA/GAN with extra cWW | geometric IL_5J7L_350 IL_49767.8 | |
IL_7TOS_170 | 1/23S/2806:2811, 1/23S/2889:2892 | No text annotation | geometric IL_5J7L_351 IL_29471.1 | |
IL_7TOS_171 | 1/23S/2838:2839, 1/23S/2878:2880 | Major groove intercalation | geometric IL_4WF9_106 IL_66635.5 | |
IL_7TOS_172 | 1/23S/2843:2846, 1/23S/2870:2874 | Multiple bulged bases with non-canonical cWW | geometric IL_5J7L_353 IL_64231.5 | |
IL_7TOS_173 | 1/23S/2847:2852, 1/23S/2865:2869 | tHS double platform | geometric IL_5J7L_354 IL_70411.2 | |
IL_7TOS_174 | 1/5S/17:18, 1/5S/65:67 | Major groove intercalation | homologous IL_5J7L_355 IL_31462.7 | |
IL_7TOS_175 | 1/5S/23:28, 1/5S/56:60 | No text annotation | homologous IL_5J7L_356 IL_18472.4 | |
IL_7TOS_176 | 1/5S/30:31, 1/5S/51:54 | Major groove minor groove platform; mini C-loop | homologous IL_4V9F_103 IL_68140.4 | |
IL_7TOS_177 | 1/5S/34:38, 1/5S/44:48 | Symmetric double minor groove platform | geometric IL_5J7L_358 IL_58103.11 | |
IL_7TOS_178 | 1/5S/71:79, 1/5S/97:105 | Bacterial 5S Loop E | homologous IL_5J7L_359 IL_56455.6 |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
IL_7TOS_034 | No text annotation | ||
IL_7TOS_046 | Tandem non-canonical cWW pairs | ||
IL_7TOS_061 | Tandem non-canonical cWW pairs | ||
IL_7TOS_095 | Isolated non-canonical cWW pair | ||
IL_7TOS_185 | No text annotation | ||
IL_7TOS_149 | No text annotation |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
J3_7TOS_001 | 1/16S/46:47, 1/16S/361:367, 1/16S/393:395 | No text annotation | homologous J3_5J7L_001 J3_67856.4 | |
J3_7TOS_002 | 1/16S/586:588, 1/16S/651:654, 1/16S/754:755 | No text annotation | homologous J3_5J7L_002 J3_56052.5 | |
J3_7TOS_028 | 1/16S/586:588, 1/16S/651:655, 1/16S/751:755 | No text annotation | homologous J3_5J7L_051 J3_17385.4 | |
J3_7TOS_003 | 1/16S/672:673, 1/16S/717:725, 1/16S/732:734 | No text annotation | homologous J3_5J7L_003 J3_11934.4 | |
J3_7TOS_004 | 1/16S/826:829, 1/16S/857:861, 1/16S/868:874 | No text annotation | homologous J3_5J7L_004 J3_85054.4 | |
J3_7TOS_005 | 1/16S/936:939, 1/16S/1344:1350, 1/16S/1372:1379 | No text annotation | homologous J3_4LFB_002 J3_25303.4 | |
J3_7TOS_006 | 1/16S/943:946, 1/16S/1235:1237, 1/16S/1337:1340 | No text annotation | homologous J3_5J7L_005 J3_52655.4 | |
J3_7TOS_007 | 1/16S/955:962, 1/16S/973:984, 1/16S/1221:1225 | No text annotation | homologous J3_5J7L_006 J3_83516.4 | |
J3_7TOS_008 | 1/16S/990:993, 1/16S/1045:1047, 1/16S/1210:1215 | No text annotation | homologous J3_5J7L_007 J3_82572.1 | |
J3_7TOS_029 | 1/16S/990:997, 1/16S/1044:1047, 1/16S/1210:1215 | No text annotation | homologous J3_5J7L_053 J3_76475.2 | |
J3_7TOS_009 | 1/16S/1003:1006, 1/16S/1023:1028, 1/16S/1033:1037 | No text annotation | ||
J3_7TOS_010 | 1/16S/1063:1068, 1/16S/1107:1113, 1/16S/1187:1193 | No text annotation | homologous J3_5J7L_008 J3_08394.3 | |
J3_7TOS_030 | 1/16S/1073:1074, 1/16S/1083:1086, 1/16S/1099:1102 | No text annotation | homologous J3_4LFB_017 J3_79369.1 | |
J3_7TOS_012 | 1/16S/1116:1118, 1/16S/1155:1158, 1/16S/1181:1184 | No text annotation | homologous J3_5J7L_010 J3_82365.4 | |
J3_7TOS_031 | 1/16S/1116:1118, 1/16S/1155:1161, 1/16S/1175:1184 | No text annotation | homologous J3_5J7L_054 J3_17791.2 | |
J3_7TOS_013 | 1/16S/1237:1241, 1/16S/1296:1303, 1/16S/1334:1337 | No text annotation | homologous J3_4LFB_009 J3_37047.6 | |
J3_7TOS_014 | 1/23S/30:31, 1/23S/474:481, 1/23S/509:510 | No text annotation | geometric J3_5J7L_036 J3_60031.2 | |
J3_7TOS_032 | 1/23S/30:31, 1/23S/474:484, 1/23S/496:510 | No text annotation | homologous J3_5J7L_066 J3_92134.2 | |
J3_7TOS_033 | 1/23S/32:35, 1/23S/445:461, 1/23S/468:473 | No text annotation | homologous J3_5J7L_067 J3_30040.2 | |
J3_7TOS_015 | 1/23S/56:57, 1/23S/70:76, 1/23S/110:114 | No text annotation | homologous J3_5J7L_037 J3_35667.2 | |
J3_7TOS_034 | 1/23S/297:301, 1/23S/316:325, 1/23S/337:341 | No text annotation | homologous J3_5J7L_068 J3_46299.2 | |
J3_7TOS_016 | 1/23S/683:689, 1/23S/773:775, 1/23S/791:794 | No text annotation | homologous J3_8VTW_001 NA | |
J3_7TOS_017 | 1/23S/698:700, 1/23S/732:736, 1/23S/760:763 | No text annotation | homologous J3_8VTW_002 NA | |
J3_7TOS_018 | 1/23S/1055:1057, 1/23S/1081:1087, 1/23S/1102:1104 | No text annotation | homologous J3_8VTW_003 NA | |
J3_7TOS_019 | 1/23S/1298:1303, 1/23S/1625:1627, 1/23S/1639:1642 | No text annotation | homologous J3_8VTW_004 NA | |
J3_7TOS_020 | 1/23S/1306:1309, 1/23S/1605:1611, 1/23S/1620:1622 | No text annotation | homologous J3_8VTW_005 NA | |
J3_7TOS_021 | 1/23S/1344:1349, 1/23S/1382:1385, 1/23S/1402:1403 | No text annotation | homologous J3_5J7L_043 J3_92705.1 | |
J3_7TOS_036 | 1/23S/1424:1429, 1/23S/1564:1565, 1/23S/1568:1574 | No text annotation | homologous J3_5J7L_069 J3_34864.2 | |
J3_7TOS_022 | 1/23S/2091:2093, 1/23S/2196:2200, 1/23S/2223:2228 | No text annotation | homologous J3_8VTW_006 NA | |
J3_7TOS_037 | 1/23S/2282:2284, 1/23S/2384:2395, 1/23S/2421:2427 | No text annotation | homologous J3_5J7L_070 J3_20992.1 | |
J3_7TOS_023 | 1/23S/2295:2299, 1/23S/2317:2323, 1/23S/2332:2337 | No text annotation | homologous J3_5J7L_071 J3_44961.1 | |
J3_7TOS_024 | 1/23S/2517:2520, 1/23S/2545:2547, 1/23S/2561:2567 | No text annotation | homologous J3_8VTW_008 NA | |
J3_7TOS_025 | 1/23S/2789:2791, 1/23S/2805:2806, 1/23S/2892:2894 | No text annotation | homologous J3_5J7L_047 J3_30104.1 | |
J3_7TOS_026 | 1/23S/2812:2815, 1/23S/2831:2836, 1/23S/2882:2888 | No text annotation | homologous J3_5J7L_048 J3_64069.1 | |
J3_7TOS_027 | 1/5S/10:16, 1/5S/68:70, 1/5S/106:110 | No text annotation | homologous J3_5J7L_049 J3_89095.1 | |
J4_7TOS_001 | 1/16S/115:122, 1/16S/239:240, 1/16S/286:289, 1/16S/311:312 | No text annotation | homologous J4_5J7L_001 J4_35578.3 | |
J4_7TOS_002 | 1/16S/142:144, 1/16S/178:184, 1/16S/193:198, 1/16S/219:221 | No text annotation | homologous J4_5J7L_002 J4_01665.1 | |
J4_7TOS_003 | 1/16S/575:577, 1/16S/764:769, 1/16S/810:821, 1/16S/879:880 | No text annotation | homologous J4_5J7L_003 J4_61885.6 | |
J4_7TOS_004 | 1/23S/268:269, 1/23S/370:375, 1/23S/399:406, 1/23S/421:424 | No text annotation | homologous J4_5J7L_018 J4_45801.6 | |
J4_7TOS_005 | 1/23S/601:604, 1/23S/624:628, 1/23S/635:638, 1/23S/650:656 | No text annotation | homologous J4_5J7L_020 J4_60168.1 | |
J4_7TOS_006 | 1/23S/1270:1276, 1/23S/1294:1295, 1/23S/1645:1648, 1/23S/2009:2010 | No text annotation | homologous J4_5J7L_021 J4_64571.5 | |
J4_7TOS_007 | 1/23S/1310:1314, 1/23S/1338:1343, 1/23S/1404:1405, 1/23S/1597:1604 | No text annotation | homologous J4_5J7L_022 J4_69051.6 | |
J4_7TOS_008 | 1/23S/1313:1314, 1/23S/1338:1343, 1/23S/1404:1405, 1/23S/1597:1603 | No text annotation | homologous J4_5J7L_023 J4_10313.5 | |
J4_7TOS_009 | 1/23S/1444:1445, 1/23S/1466:1467, 1/23S/1525:1526, 1/23S/1546:1547 | No text annotation | homologous J4_5J7L_024 J4_24280.2 | |
J4_7TOS_010 | 1/23S/1772:1776, 1/23S/1788:1792, 1/23S/1827:1830, 1/23S/1975:1979 | No text annotation | homologous J4_5J7L_025 J4_61477.5 | |
J4_7TOS_011 | 1/23S/1833:1835, 1/23S/1905:1906, 1/23S/1924:1933, 1/23S/1967:1972 | No text annotation | homologous J4_9DFE_008 J4_93343.1 | |
J4_7TOS_012 | 1/23S/2285:2289, 1/23S/2343:2347, 1/23S/2370:2372, 1/23S/2381:2383 | No text annotation | homologous J4_5J7L_027 J4_04930.6 | |
J4_7TOS_013 | 1/23S/2643:2646, 1/23S/2674:2676, 1/23S/2731:2735, 1/23S/2769:2771 | No text annotation | homologous J4_5J7L_028 J4_77044.4 | |
J5_7TOS_001 | 1/16S/36:39, 1/16S/403:406, 1/16S/436:440, 1/16S/497:500, 1/16S/545:548 | No text annotation | homologous J5_5J7L_001 J5_92941.1 | |
J5_7TOS_002 | 1/16S/36:39, 1/16S/403:406, 1/16S/436:442, 1/16S/492:500, 1/16S/545:548 | No text annotation | homologous J5_5J7L_002 J5_67416.1 | |
J5_7TOS_003 | 1/16S/58:61, 1/16S/106:113, 1/16S/314:316, 1/16S/337:339, 1/16S/350:354 | No text annotation | homologous J5_4LFB_002 J5_59910.6 | |
J5_7TOS_004 | 1/23S/47:54, 1/23S/116:121, 1/23S/130:131, 1/23S/148:150, 1/23S/176:178 | No text annotation | homologous J5_5J7L_013 J5_01737.2 | |
J5_7TOS_005 | 1/23S/531:533, 1/23S/560:564, 1/23S/577:579, 1/23S/1261:1262, 1/23S/2017:2018 | No text annotation | homologous J5_5J7L_014 J5_43153.5 | |
J5_7TOS_006 | 1/23S/584:589, 1/23S/668:671, 1/23S/809:812, 1/23S/1195:1196, 1/23S/1250:1256 | No text annotation | homologous J5_5J7L_015 J5_74302.5 | |
J5_7TOS_007 | 1/23S/1674:1682, 1/23S/1706:1707, 1/23S/1751:1752, 1/23S/1756:1764, 1/23S/1988:1990 | No text annotation | homologous J5_5J7L_016 J5_62523.6 | |
J5_7TOS_008 | 1/23S/2057:2064, 1/23S/2446:2453, 1/23S/2500:2507, 1/23S/2582:2588, 1/23S/2606:2611 | No text annotation | ||
J5_7TOS_009 | 1/23S/2074:2077, 1/23S/2243:2246, 1/23S/2258:2259, 1/23S/2281:2282, 1/23S/2427:2435 | No text annotation | homologous J5_4WF9_007 J5_39529.1 | |
J6_7TOS_001 | 1/23S/45:46, 1/23S/179:183, 1/23S/214:224, 1/23S/231:235, 1/23S/262:266, 1/23S/426:433 | No text annotation | ||
J6_7TOS_002 | 1/23S/2074:2077, 1/23S/2243:2246, 1/23S/2258:2259, 1/23S/2281:2284, 1/23S/2384:2395, 1/23S/2421:2435 | No text annotation | ||
J7_7TOS_001 | 1/23S/8:15, 1/23S/525:531, 1/23S/2018:2023, 1/23S/2040:2043, 1/23S/2625:2630, 1/23S/2788:2789, 1/23S/2894:2895 | No text annotation | ||
J7_7TOS_002 | 1/23S/817:822, 1/23S/835:838, 1/23S/940:946, 1/23S/971:976, 1/23S/987:991, 1/23S/1163:1164, 1/23S/1185:1190 | No text annotation |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
J3_7TOS_011 | No text annotation | ||
J3_7TOS_035 | No text annotation |
Coloring options: