HL_7TOS_022

3D structure

PDB id

7TOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGAGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOS_022 not in the Motif Atlas

Homologous match to HL_4LFB_022

Geometric discrepancy: 0.2521

The information below is about HL_4LFB_022

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

7TOS|1|16S|A|1012
7TOS|1|16S|G|1013
7TOS|1|16S|A|1014
7TOS|1|16S|G|1015
7TOS|1|16S|A|1016
7TOS|1|16S|U|1017

Current chains

Chain 16S

16S ribosomal RNA

Nearby chains

Chain S14

30S ribosomal protein S14

Chain S19

30S ribosomal protein S19