HL_7TOS_027

3D structure

PDB id

7TOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAUAAA

Length

7 nucleotides

Bulged bases

7TOS|1|16S|A|1167, 7TOS|1|16S|U|1168

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOS_027 not in the Motif Atlas

Homologous match to HL_4LFB_027

Geometric discrepancy: 0.3015

The information below is about HL_4LFB_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

7TOS|1|16S|U|1165
7TOS|1|16S|G|1166
7TOS|1|16S|A|1167
7TOS|1|16S|U|1168
7TOS|1|16S|A|1169
7TOS|1|16S|A|1170
7TOS|1|16S|A|1171

Current chains

Chain 16S

16S ribosomal RNA

Nearby chains

Chain S02

30S ribosomal protein S2

Chain S21

Ribosomal protein S21