HL_7TOS_038

3D structure

PDB id

7TOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

7TOS|1|23S|A|196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOS_038 not in the Motif Atlas

Geometric match to HL_4WF9_006

Geometric discrepancy: 0.1318

The information below is about HL_4WF9_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

22

Unit IDs

7TOS|1|23S|G|194
7TOS|1|23S|A|195
7TOS|1|23S|A|196
7TOS|1|23S|A|197
7TOS|1|23S|C|198
7TOS|1|23S|A|199
7TOS|1|23S|U|200
7TOS|1|23S|C|201

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L15

50S ribosomal protein L15

Chain L28

50S ribosomal protein L28