HL_7TOS_041

3D structure

PDB id

7TOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

7TOS|1|23S|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOS_041 not in the Motif Atlas

Geometric match to HL_5J7L_142

Geometric discrepancy: 0.1404

The information below is about HL_5J7L_142

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

7TOS|1|23S|C|305
7TOS|1|23S|U|306
7TOS|1|23S|G|307
7TOS|1|23S|G|308
7TOS|1|23S|A|309
7TOS|1|23S|A|310
7TOS|1|23S|A|311
7TOS|1|23S|G|312

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L24

Ribosomal protein L24