HL_7TOS_062

3D structure

PDB id

7TOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOS_062 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.1879

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

7TOS|1|23S|U|1222
7TOS|1|23S|G|1223
7TOS|1|23S|U|1224
7TOS|1|23S|G|1225
7TOS|1|23S|A|1226
7TOS|1|23S|G|1227

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L15

50S ribosomal protein L15

Chain L20

50S ribosomal protein L20

Chain L21

Ribosomal protein L21