HL_7TOS_066

3D structure

PDB id

7TOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

7TOS|1|23S|U|1396, 7TOS|1|23S|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOS_066 not in the Motif Atlas

Geometric match to HL_5J7L_168

Geometric discrepancy: 0.1376

The information below is about HL_5J7L_168

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7TOS|1|23S|G|1389
7TOS|1|23S|U|1390
7TOS|1|23S|U|1391
7TOS|1|23S|A|1392
7TOS|1|23S|A|1393
7TOS|1|23S|U|1394
7TOS|1|23S|A|1395
7TOS|1|23S|U|1396
7TOS|1|23S|U|1397
7TOS|1|23S|C|1398

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L23

50S ribosomal protein L23