HL_7TOS_067

3D structure

PDB id

7TOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

7TOS|1|23S|A|1453, 7TOS|1|23S|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOS_067 not in the Motif Atlas

Geometric match to HL_4L8H_001

Geometric discrepancy: 0.2103

The information below is about HL_4L8H_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

7TOS|1|23S|C|1451
7TOS|1|23S|G|1452
7TOS|1|23S|A|1453
7TOS|1|23S|C|1454
7TOS|1|23S|G|1455
7TOS|1|23S|G|1456
7TOS|1|23S|U|1457
7TOS|1|23S|U|1458
7TOS|1|23S|G|1459

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L17

50S ribosomal protein L17